ArticleFrontiers in microbiology2026
Genome-wide analysis and growth-promoting potential of
Article in Frontiers in microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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9 authors.
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Abstract
Introduction: Sulfur-oxidizing bacteria can contribute to the conversion of reduced or organic sulfur pools into plant-available sulfate, thereby improving soil sulfur availability and supporting sustainable agricultural production. This study aimed to characterize the whole-genome features of the rapeseed rhizosphere strain Methods: Whole-genome sequencing of strain YNK-FB0053 was performed using combined Illumina NovaSeq short-read sequencing and PacBio Sequel third-generation single-molecule long-read sequencing, followed by genome assembly, quality assessment, and multi-database functional annotation. The complete genome sequence has been deposited in the GenBank database under accession number JBQPHS000000000. Assembly quality was evaluated using sequencing depth, read-mapping coverage, CheckM completeness/contamination, and BUSCO completeness. Genes predicted to be involved in sulfur metabolism, secondary metabolite biosynthesis, nutrient transformation, phytohormone production, and rhizosphere colonization were systematically identified. Biofilm formation assays, root colonization tests, and Chinese cabbage pot experiments were conducted to evaluate rhizosphere adaptability and plant growth-promoting effects. Results: The final assembly consisted of two circular chromosomes totaling 8,148,635 bp, with a GC content of 68.07%. Illumina sequencing generated 996,434,009 bp of clean data with Q20 and Q30 values of 97.82 and 90.65%, respectively, while PacBio sequencing generated 548,213,285 bp of reads with an average read length of 10,518.29 bp and a reads N50 of 10,547 bp. The PacBio sequencing depth was 67.28 × , and both Illumina and PacBio reads showed 100% read-mapping coverage of the assembly. CheckM estimated genome completeness as 100%, with 1.68% contamination and 0% strain heterogeneity, while BUSCO analysis showed 100% complete single-copy BUSCOs. A total of 6,898 protein-coding genes were predicted, with an average coding gene length of 1,022.80 bp. Sulfur metabolism annotation identified sqr, Sox-related genes ( Conclusion:
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