Evidence map›Paper›PMID 42492029›Full record

ArticleJCO precision oncology2026

Prognostic Significance of Cell-Free DNA Derived 5-Hydroxymethylcytosine Signatures in Newly Diagnosed Multiple Myeloma.

Zhou Zhang, Benjamin Derman, Bei Wang, Krissana Kowitwanich, John Cursio, Lu Gao, Daniel Appelbaum, Chuan He, Andrzej Jakubowiak, Wei Zhang and 1 more

Abstract read
In one paragraph

Article in JCO precision oncology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zhou ZhangDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.
Benjamin DermanSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL.ORCID 0000-0002-4070-1819
Bei WangDepartment of Public Health Sciences, The University of Chicago, Chicago, IL.ORCID 0000-0002-3125-5140
Krissana KowitwanichDepartment of Chemistry, The University of Chicago, Chicago, IL.
John CursioDepartment of Public Health Sciences, The University of Chicago, Chicago, IL.ORCID 0000-0003-2131-1767
Lu GaoDepartment of Chemistry, The University of Chicago, Chicago, IL.ORCID 0009-0006-3950-9332
Daniel AppelbaumDepartment of Radiology, The University of Chicago, Chicago, IL.ORCID 0000-0003-2362-6391
Chuan HeDepartment of Chemistry, The University of Chicago, Chicago, IL.
Andrzej JakubowiakSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL.ORCID 0000-0002-2597-6822
Wei ZhangDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.ORCID 0000-0003-0875-263X
Brian C ChiuDepartment of Public Health Sciences, The University of Chicago, Chicago, IL.ORCID 0000-0001-8979-7244

Funding

Epigenomic markers of circulating cell-free DNA and treatment outcome in multiple myelomaR01CA223662 · NCI · UNIVERSITY OF CHICAGO · PI CHIU, BRIAN C-H, ZHANG, WEI · 2018 to 2022
$3.2M
Integrating liquid biopsy-based epigenetic and imaging modalities to evaluate disease response in multiple myelomaR01CA280637 · NCI · UNIVERSITY OF CHICAGO · PI BRIAN C-H CHIU, Benjamin Derman · 2023 to 2026
$2.6M
A highly sensitive linear amplification based DNA methylation profiling technique for clinical cancer researchR33CA269100 · NCI · UNIVERSITY OF CHICAGO · PI CHIU, BRIAN C-H, ZHANG, WEI · 2022 to 2024
$1.2M
RNA m6A modifications and treatment response in multiple myelomaR21CA283588 · NCI · UNIVERSITY OF CHICAGO · PI CHIU, BRIAN C-H, ZHANG, WEI · 2024 to 2025
$430k
Elucidating novel epigenetic modifications implicated in multiple myeloma risk disparitiesR56CA282891 · NCI · UNIVERSITY OF CHICAGO · PI CHIU, BRIAN C-H, ZHANG, WEI · 2023 to 2023
$300k
NCI NIH HHS R01 CA223662NCI NIH HHS R01 CA280637NCI NIH HHS R21 CA283588NCI NIH HHS R33 CA269100NCI NIH HHS R56 CA282891
6 · The paper itself

Abstract

purposeWhile survival outcomes in multiple myeloma (MM) have improved with contemporary combination therapies, predicting disease trajectories for individual patients at diagnosis remains a significant challenge. We investigate the prognostic value of a noninvasive biomarker-cell-free DNA (cfDNA)‑derived 5-hydroxymethylcytosine (5hmC) signature-in newly diagnosed MM, aiming to improve risk stratification at diagnosis. MATERIALS AND

methodsIn this prospective cohort study, 321 patients with newly diagnosed MM were enrolled between 2010 and 2017, with follow-up through 2022. We profiled genome-wide 5hmC modifications (gene bodies) in cfDNA collected at diagnosis. We applied elastic net regularization to a Cox proportional hazards model to identify 5hmC signatures associated with overall survival (OS) and progression-free survival (PFS). A weighted prognostic score (wp-score), based on 18 key 5hmC-modified genes, was developed through machine learning and validated in the validation set, controlling for clinical prognostic factors.

resultsDuring a median follow-up of 70.5 months, 127 deaths occurred. The cfDNA 5hmC at diagnosis reflected the 5hmC in bone marrow‑derived tumor cells and differed across clinical subgroups. The wp-score showed strong prognostic ability for OS (hazard ratio [HR], 2.9 [95% CI, 1.7 to 4.9];

conclusionThis prospective study suggests that cfDNA-derived 5hmC signatures at diagnosis provide independent prognostic information for OS and PFS in MM. These findings support further investigation and independent validation of noninvasive epigenomic biomarkers within contemporary MM risk stratification frameworks.

Indexed as

5-MethylcytosineCell-Free Nucleic AcidsMultiple MyelomaAgedBiomarkers, TumorFemaleHumansMalePrognosisProspective Studies5-hydroxymethylcytosine5-MethylcytosineBiomarkers, TumorCell-Free Nucleic Acids

Identifiers

PMID42492029
PMCPMC13418869

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.