Evidence map›Paper›PMID 42490978›Full record

ReviewFrontiers in microbiomes2026

Artificial intelligence in soil microbiome-driven agriculture: from practical limits to a translational roadmap.

Acharya Balkrishna, Priyanka Chaudhary, Shelly Singh, Anishka Saini, Aditi Kumari, Khushi Ishika Mahato, Vedpriya Arya

Abstract readReview
In one paragraph

Review in Frontiers in microbiomes, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Acharya BalkrishnaPatanjali Herbal Research Division, Patanjali Research Foundation, Haridwar, Uttarakhand, India.
Priyanka ChaudharyPatanjali Herbal Research Division, Patanjali Research Foundation, Haridwar, Uttarakhand, India.
Shelly SinghPatanjali Herbal Research Division, Patanjali Research Foundation, Haridwar, Uttarakhand, India.
Anishka SainiPatanjali Herbal Research Division, Patanjali Research Foundation, Haridwar, Uttarakhand, India.
Aditi KumariDepartment of Biotechnology, Babasaheb Bhimrao Ambedkar University, Lucknow, India.
Khushi Ishika MahatoDepartment of Biotechnology, Babasaheb Bhimrao Ambedkar University, Lucknow, India.
Vedpriya AryaPatanjali Herbal Research Division, Patanjali Research Foundation, Haridwar, Uttarakhand, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Soil microbiome research has been revolutionized by advances in high-throughput sequencing and multi-omics technologies, generating massive datasets that capture the taxonomic, functional, and metabolic diversity of microbial communities in agricultural soils; however, interpreting these complex datasets and translating them into practical agronomic insights remains challenging. Objectives: To critically assess the role of artificial intelligence (AI) in soil microbiome-driven agriculture, focusing on methodological developments, prediction performance, existing limitations, and translational opportunities. Methods: A narrative review was conducted to evaluate commonly used AI approaches, including random forest, gradient boosting, support vector machines, and deep learning architectures, alongside key microbiome data types such as amplicon sequencing, metagenomics, and functional gene profiling, with integration of environmental, agronomic, and meteorological datasets. Results: The prediction of crop productivity, disease risk, nutrient cycling dynamics, and soil health indicators may be enhanced by AI-assisted integration of microbiome, soil physicochemical, and meteorological data, according to several studies. However, broad generalizations about predictive robustness and generalizability are limited by significant diversity in datasets, validation methods, and model architectures. Discussion: To address these limitations, a five-phase implementation framework integrating centralized data systems, AI-driven analytics, multi-omics profiling, standardized soil sampling, and feedback-based model retraining within precision agriculture systems is proposed, providing a pathway for translating microbiome insights into field-scale decision support. Conclusion: AI-enabled soil microbiome applications hold significant potential for sustainable agriculture, but future advancements will require large, multisite datasets, improved validation strategies, interpretable modeling approaches, and integration with digital agriculture technologies, highlighting both opportunities and practical constraints.

Indexed as

artificial intelligencemachine learningmicrobiome engineeringmulti-omics integrationprecision agriculturesoil healthsoil microbiometranslational agriculture

Identifiers

PMID42490978
PMCPMC13375881

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.