Evidence map›Paper›PMID 42481527›Full record

ArticleNature communications2026

A genomic catalog of the mouse gut virome reveals features associated with ageing.

Han-June Kim, Nayeon Kim, Jun Hyung Cha, Wonjong Kim, Junyeong Ma, Jungyeon Kim, Yerin Kim, Sunmo Yang, Sanguine Byun, Eunjung Lee and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Han-June KimDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.ORCID http://orcid.org/0009-0000-8687-3053
Nayeon KimDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Jun Hyung ChaDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Wonjong KimDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Junyeong MaDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0003-2069-3783
Jungyeon KimDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Yerin KimDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Sunmo YangDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Sanguine ByunDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Eunjung LeeFermentation Convergence Research Group, Korea Food Research Institute, Wanju, Republic of Korea.
Martin HembergGene Lay Institute of Immunology and Inflammation, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-8895-5239
Insuk LeeDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea. insuklee@yonsei.ac.kr.ORCID http://orcid.org/0000-0003-3146-6180

Funding

Korea Health Industry Development Institute (KHIDI) HI19C1344National Research Foundation of Korea (NRF) 2022R1A2C1092062National Research Foundation of Korea (NRF) RS-2025-18362970
6 · The paper itself

Abstract

The gut virome is emerging as a key contributor to host physiology, yet it remains underexplored relative to the gut bacteriome. Despite comprehensive viral catalogs for the human gut, comparable resources for mice, the principal model organism in biomedical research, remain lacking, limiting our understanding of virome-host interactions and their implications for host health and disease. Here, we present Mouse Reference Gut Virome (MRGV), a comprehensive catalog comprising 109,778 viral genomes with ≥50% completeness and representing 28,824 species, expanding known mouse gut viral diversity by ~67.6%. Viral genome binning accounted for ~36% of cataloged genomes and improved average completeness by ~60% relative to contig-level assemblies. Structure-based annotation assigned functions to nearly half of 8.2 million viral proteins. Comparison with human gut virome revealed pronounced taxonomic and functional divergence. MRGV enabled host linkage for 88% of viral genomes and validated diverse mouse-associated crAss-like lineages with lineage-specific host-range and lifestyle strategies. Finally, mouse gut virome features harbored host ageing-associated signals distinct from those captured by bacterial features, with most ageing markers derived from binned genomes, highlighting the importance of viral binning for elucidating virome-host interactions.

Indexed as

AgingGastrointestinal MicrobiomeGenome, ViralViromeVirusesAnimalsGenomicsHost SpecificityHumansMicePhylogeny

Identifiers

PMID42481527
PMCPMC13503771

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.