Evidence map›Paper›PMID 42476140›Full record

ReviewCell genomics2026

Are different populations fairly represented in single-cell omic atlases?

Catrina Yang, Kavitharini Saravanan, Aryan Saharan, Kuan-Lin Huang

Abstract readReview
In one paragraph

Review in Cell genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Catrina YangUniversity of Oxford, Green Templeton College, Medical Sciences Division, Oxford OX2 6HG, UK.
Kavitharini SaravananUniversity of North Carolina at Charlotte, Charlotte, NC, USA.
Aryan SaharanSaint Louis University, St. Louis, MO, USA.
Kuan-Lin HuangDepartment of Genetics and Genomic Sciences, Department of Artificial Intelligence and Human Health, Center for Transformative Disease Modeling, Tisch Cancer Institute, Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: kuan-lin.huang@mssm.edu.

Funding

Integrative Approaches for Identifying Causal Gene-Cell Type Pairs of Complex DiseaseR35GM138113 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Kuan-lin Huang · 2020 to 2026
$3.0M
Genomics-Empowered AI for Personalized Cancer Risk Assessment, Monitoring, and PreventionUG3AG105083 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Paul Stuart Appelbaum, Wendy K Chung · 2026 to 2026
$1.5M
NIA NIH HHS UG3 AG105083NIGMS NIH HHS R35 GM138113
6 · The paper itself

Abstract

Single-cell omic atlases are transforming biology and medicine, yet their demographic representativeness has not been systematically evaluated. We analyzed >13,500 samples from the Human Cell Atlas (HCA), Human Tumor Atlas Network (HTAN), and PsychAD Consortium. Benchmarking against global and US general and disease-prevalence data, we found a striking, pervasive European overrepresentation and underrepresentation of Asian and Latino individuals. Nearly 70% of HCA samples lacked ancestry annotation, and among annotated samples, Europeans were overrepresented 6-fold. PsychAD was nearly two-thirds European. HTAN tumors were 69% European, with several cancer types showing sex skews beyond expected incidence. These disparities highlight that current single-cell resources risk embedding inequities into AI foundational models, biomarker discovery, and therapeutic development. We contextualize these findings within the structural, economic, and regulatory spaces; survey the growing ecosystem of diversity-focused initiatives; and provide an actionable, field-specific checklist to help research teams design single-cell studies whose benefits extend equitably across populations.

Indexed as

GenomicsNeoplasmsSingle-Cell AnalysisFemaleHumansMaleMultiomics

Identifiers

PMID42476140
PMCPMC13477034

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.