Evidence map›Paper›PMID 42475679›Full record

ArticleNucleic acids research2026

Pol γ possesses separate metal binding sites for polymerase and strand displacement functions.

Noe Baruch-Torres, Joon Park, Josue Mora-Garduño, Arkanil Roy, Anupam Singh, G Andrés Cisneros, Luis G Brieba, Smita S Patel, Y Whitney Yin

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Noe Baruch-TorresDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, United States.
Joon ParkDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, United States.ORCID 0000-0002-3983-6433
Josue Mora-GarduñoUnidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV-IPN), Apartado Postal 629, CP 36821, Irapuato, Guanajuato, México.
Arkanil RoyDepartment of Chemistry and Biochemistry, University of Texas at Dallas, Richardson, TX 75080, United States.
Anupam SinghDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, United States.
G Andrés CisnerosDepartment of Chemistry and Biochemistry, University of Texas at Dallas, Richardson, TX 75080, United States.ORCID 0000-0001-6629-3430
Luis G BriebaUnidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV-IPN), Apartado Postal 629, CP 36821, Irapuato, Guanajuato, México.ORCID 0000-0002-6073-5207
Smita S PatelDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, United States.
Y Whitney YinDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, United States.ORCID 0000-0001-7063-9385

Funding

Mechanistic studies of nucleic acid enzymes involved in DNA replication, transcription, and innate immunity.R35GM118086 · NIGMS · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI SMITA S PATEL · 2016 to 2026
$8.9M
Structural Basis for Antiviral Drug Mitochondrial ToxicityR01AI134611 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI YIN, YUHUI · 2018 to 2022
$2.0M
Mitochondrial translesion DNA synthesisR01GM145925 · NIGMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Yuhui Whitney Yin · 2023 to 2026
$1.4M
Computational Simulations of DNA Transaction Enzymes - Application and DevelopmentR35GM151951 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI Gerardo Andres Cisneros · 2024 to 2026
$1.2M
NIAID NIH HHS R01 AI134611NIGMS NIH HHS R01 GM145925NIGMS NIH HHS R35 GM118086NIGMS NIH HHS R35 GM151951NIH HHS MIRA GM118086NIH HHS R01AI134611NIH HHS R01GM145925NIH HHS R35GM151951Pew Charitable TrustsSealy and Smith Foundation
6 · The paper itself

Abstract

Accurate replication of the mitochondrial genome (mtDNA) depends on DNA polymerase γ (Pol γ), yet its strand-displacement activity has been reported with varying outcomes across studies. Here we show that human Pol γ carries out robust, processive strand-displacement synthesis under physiological divalent metal-ion concentrations. We identify two functional classes of metal-binding sites: high-affinity sites that support DNA synthesis and unwinding, and low-affinity sites that selectively suppress unwinding without impairing polymerase activity. Pol γ efficiently displaces DNA/DNA duplex and RNA/DNA hybrids, supporting a role in RNA primer removal during mtDNA replication. Cryo-EM structures of Pol γ bound to fork-mimicking DNA reveal conformational states corresponding to progressive duplex unwinding and identify structural elements that facilitate strand displacement. These findings establish a metal-dependent mechanism for Pol γ activity and reconcile previous discrepancies in its reported unwinding capacity.

Indexed as

DNA, MitochondrialDNA Polymerase gammaMetalsBinding SitesCryoelectron MicroscopyDNADNA ReplicationHumansModels, MolecularRNADNADNA, MitochondrialDNA Polymerase gammaMetalsRNA

Identifiers

PMID42475679
PMCPMC13384260

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.