Evidence map›Paper›PMID 42475181›Full record

ArticleSTAR protocols2026

Protocol for mapping gene essentiality changes in yeast using inducible gene deletion mutants.

Sabine van Schie, Jolanda van Leeuwen

Abstract read
In one paragraph

Article in STAR protocols, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sabine van SchieDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA; Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Jolanda van LeeuwenDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA; Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland. Electronic address: jolanda.vanleeuwen@umassmed.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene essentiality can differ among genetically distinct individuals. In this protocol, we describe a systematic approach for identifying genes that are essential in a laboratory strain of the budding yeast Saccharomyces cerevisiae but vary in essentiality across other yeast isolates. This approach relies on a collection of inducible essential gene deletion mutants in the laboratory background. We describe steps for crossing this collection to a yeast isolate of interest, selecting haploid segregant progeny, inducing essential gene loss, and determining viability. For complete details on the use and execution of this protocol, please refer to Batté et al.

Indexed as

GeneticsGenomicsHigh Throughput ScreeningMicrobiologyModel OrganismsSystems biology

Identifiers

PMID42475181
PMCPMC13393449

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.