ArticleJournal of chemical information and modeling2026
lmp2gro: A Python Tool for Converting LAMMPS Data Files into GROMACS Topologies.
Article in Journal of chemical information and modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
lmp2gro is a Python utility designed to streamline the generation of GROMACS topologies for systems where traditional parametrization is often challenging. Although developed primarily for periodic systems, such as metal-organic frameworks (MOFs), the tool is equally applicable to molecular systems containing a single residue type. The program parses LAMMPS data files, maps force field terms onto the corresponding GROMACS functional forms, and automatically generates all necessary input files. This workflow enables seamless access to all of the capabilities of the GROMACS simulation engine. The versatility of the tool is demonstrated through two case studies: (i) H2 adsorption in MOF-5 (IRMOF-1) using the universal force field (UFF) and (ii) the behavior of a water droplet on a silica Q4 surface using the INTERFACE-FF. A step-by-step guide is provided for both applications. The lmp2gro source code and tutorial materials are freely available at https://github.com/AlexandreMoniPereira/lmp2gro.
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