Evidence map›Paper›PMID 42473429›Full record

ArticleJournal of medical virology2026

Genomic and Immunological Insights Into Chikungunya Virus Evolution During the 2018 and 2023-24 Outbreaks in Southern India.

Ferdinamarie Sharmila Philomenadin, Haripriya Sivakumar, Nivedha Devanathan, Samiksha Priya, Narayan Ramamurthy, Ratchagadasse Vimal Raj, Sangitha Jayagandan, Rahul Dhodapkar

Abstract read
In one paragraph

Article in Journal of medical virology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ferdinamarie Sharmila PhilomenadinRegional Virus Research and Diagnostic Laboratory (RVRDL), Department of Microbiology, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India.ORCID https://orcid.org/0000-0002-2058-2672
Haripriya SivakumarRegional Virus Research and Diagnostic Laboratory (RVRDL), Department of Microbiology, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India.
Nivedha DevanathanRegional Virus Research and Diagnostic Laboratory (RVRDL), Department of Microbiology, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India.
Samiksha PriyaSchool of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, India.
Narayan RamamurthyRegional Virus Research and Diagnostic Laboratory (RVRDL), Department of Microbiology, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India.
Ratchagadasse Vimal RajRegional Virus Research and Diagnostic Laboratory (RVRDL), Department of Microbiology, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India.
Sangitha JayagandanRegional Virus Research and Diagnostic Laboratory (RVRDL), Department of Microbiology, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India.
Rahul DhodapkarRegional Virus Research and Diagnostic Laboratory (RVRDL), Department of Microbiology, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India.ORCID https://orcid.org/0000-0002-8984-3332

Funding

Department of Health Research, India No. R. 15012/04/2019-h-VRDL
6 · The paper itself

Abstract

Chikungunya virus (CHIKV) continues to pose a significant public health threat due to recurrent outbreaks driven by antigenic drift, vector adaptation and potential changes in virulence. This study examined the genetic and antigenic characteristics of CHIKV isolates from the 2018 and 2023-24 outbreaks in southern India. Whole-genome sequencing and phylogenetic analysis were performed on outbreak isolates. Structural protein B-cell epitopes were analyzed and mutations associated with vector adaptation and neurovirulence were screened. Serum samples collected in mid-2023 were tested using plaque reduction neutralization test against both outbreak strains. All isolates clustered within the C2.3 clade of the ECSA-IOL genotype and showed close relationship with strains from India, Kenya, Thailand, and Bangladesh. A total of 71 nonstructural and 45 structural mutations were identified relative to the reference strain (S27), with fewer variations in the 2023-24 isolates when compared with 2018 isolates. Adaptive mutations E1:K211E, E2:V264A, and E2:I211T indicated possible dual-vector adaptation. No established neurovirulence mutations were detected. Neutralization and epitope analyzes showed reduced antibody efficacy against 2023-24 isolates. The 2023-24 CHIKV strains remain genetically stable but exhibit adaptive mutations that may enhance transmission and reduce neutralization, highlighting the need for continued genomic and immunological surveillance.

Indexed as

Chikungunya FeverChikungunya virusDisease OutbreaksEvolution, MolecularAnimalsAntibodies, NeutralizingAntibodies, ViralEpitopes, B-LymphocyteGenome, ViralGenotypeHumansIndiaMutationNeutralization TestsPhylogenyWhole Genome SequencingAntibodies, NeutralizingAntibodies, ViralEpitopes, B-LymphocyteB‐cell epitope analysisChikungunya virusplaque reduction neutralization testwhole‐genome analysis

Identifiers

PMID42473429
PMCPMC13382205

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.