Evidence map›Paper›PMID 42468524›Full record

ArticleCell2026

Robust regulatory interplay of enhancers, facilitators, and promoters in a native chromatin context.

Zhou Zhou, Yang Cheng, Jaret Lieberth, Junke Zhang, Yiyang Jin, Albert Li, Haiyuan Yu, Abdullah Ozer, John T Lis

Abstract read
In one paragraph

Article in Cell, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Synthetic Regulatory Genomics.Annual review of genomics and human genetics · 2026
    Review
  2. Locus-Scale Massively Parallel Reporter Assays.bioRxiv : the preprint server for biology · 2026
    Article
  3. Facilitators may represent a new class of regulatory elements.Current opinion in genetics & development · 2026
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Zhou ZhouDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Yang ChengDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Jaret LieberthDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Junke ZhangDepartment of Computational Biology, Cornell University, Ithaca, NY 14853, USA; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853, USA.
Yiyang JinDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853, USA.
Albert LiCollege of Agriculture and Life Sciences, Cornell University, Ithaca, NY 14853, USA.
Haiyuan YuDepartment of Computational Biology, Cornell University, Ithaca, NY 14853, USA; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853, USA.
Abdullah OzerDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA. Electronic address: ao223@cornell.edu.
John T LisDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA. Electronic address: jtl10@cornell.edu.

Funding

Functional Architecture and Interplay of Transcription Regulatory Elements of the Human GenomeR01HG012970 · NHGRI · CORNELL UNIVERSITY · PI JOHN T LIS, Haiyuan Yu · 2023 to 2026
$2.7M
NHGRI NIH HHS R01 HG012970
6 · The paper itself

Abstract

Enhancers are abundant and critical gene-distal cis-regulatory elements with distinct architectural features; however, a mechanistic understanding of their interactions within endogenous chromatin contexts remains challenging. Here, we developed a recombinase-mediated genome-rewriting platform to explore how a long-range human enhancer, eNMU, confers a remarkable 10,000-fold activation of its target gene, Neuromedin U (NMU), at its native locus. Our systematic dissection reveals two functionally distinct sub-elements of eNMU: the canonical autonomous enhancer e1 and the intrinsically inactive facilitator e2, which dramatically augments e1's activity. The autonomous enhancer e1 is functionally hierarchical to e2, additional facilitators, and the NMU promoter across the ∼100-kb NMU-eNMU region, and it orchestrates the formation of a 3D regulatory hub. e1 also harbors a bipartite structure: a divergently transcribed retroviral long terminal repeat (LTR) enhancer and an adjacent LTR promoter that dampens NMU expression. We explore and discuss the broader implications of our focused study for understanding enhancer regulatory mechanisms genome-wide.

Indexed as

ChromatinEnhancer Elements, GeneticPromoter Regions, GeneticAnimalsHumansTerminal Repeat SequencesChromatinenhancersfacilitatorsGATA1LTRNMUpromotersRUNX1STAT5transcription factorstranscription regulation

Identifiers

PMID42468524
PMCPMC13437135

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.