Evidence map›Paper›PMID 42465402›Full record

ArticlebioRxiv : the preprint server for biology2026

Crowdsourced riboregulators reveal design principles for programmable RNA switching.

James M Robson, Gabrielle Moussas, Dayna Francis, Alexander A Green

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

James M RobsonDepartment of Biomedical Engineering, Boston University, Boston, Massachusetts, 02215, United States.ORCID 0000-0003-1609-0007
Gabrielle MoussasBiological Design Center, Boston University, Boston, Massachusetts, 02215, United States.
Dayna FrancisJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, 33136, United States.
Alexander A GreenDepartment of Biomedical Engineering, Boston University, Boston, Massachusetts, 02215, United States.ORCID 0000-0003-2058-1204

Funding

Programming cellular behavior by mechanical forcesR01EB037112 · NIBIB · YALE UNIVERSITY · PI Julien Berro, Alexander Arthur Green · 2024 to 2026
$7.2M
Rapid Low-Cost Paper-based Biodosimetry that reveals individual organ injuriesU01AI148319 · NIAID · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI LABAER, JOSHUA · 2020 to 2024
$2.5M
Model-guided design of RNA stabilizing elements for improved coronavirus diagnosticsR01EB031893 · NIBIB · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI GREEN, ALEXANDER ARTHUR, WANG, XIAO · 2021 to 2022
$1.3M
Synthetic Biology and Biotechnology (SB2) Predoctoral Training ProgramT32GM130546 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI CHEN, CHRISTOPHER S, KHALIL, AHMAD SAMIR · 2019 to 2023
$1.0M
NIAID NIH HHS U01 AI148319NIBIB NIH HHS R01 EB031893NIBIB NIH HHS R01 EB037112NIGMS NIH HHS T32 GM130546
6 · The paper itself

Abstract

RNA-based sensors offer powerful and programmable control of gene expression, yet our understanding of the structural principles that govern their potential design space remains incomplete. Here, we challenged a community of designers to generate novel riboregulators capable of activating translation in response to specific RNA targets. Participants submitted diverse sequence architectures, which were synthesized and evaluated in a cell-free transcription-translation system. Across 100 designs, community-generated riboregulators displayed wide variability in activation dynamics, fold change, and structural features, outperforming some canonical toehold-switch designs and achieving up to 80-fold activation. Structural ensemble analyses identified accessibility patterns near the ribosome binding site that distinguish high- from low-performing regulators, highlighting the central role of RBS sequestration and release in modulating expression. Together, we demonstrate community-driven design can expand the accessible structural space of riboregulators and uncover mechanistic features governing translational activation. Our findings establish quantitative links between RNA folding energetics and gene expression output, providing design principles for next-generation programmable RNA sensors.

Indexed as

cell-free systemcrowdsourced sciencediagnosticskineticsriboregulatorsRNA sensors

Identifiers

PMID42465402
PMCPMC13370501

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.