Evidence map›Paper›PMID 42464109›Full record

ArticleBMC genomics2026

Chromosome-scale genome of Ormosia hosiei provides insights into legume tree genome evolution.

Yi Wang, Minhao Liu, Liang Shi, Binhao Yang, Linli Dai, Hanbo Yang, Jinwu Li, Huimin Zhao, Xingcui Xiao, Hongying Guo and 2 more

Abstract read
In one paragraph

Article in BMC genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yi WangSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China.
Minhao LiuSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China.
Liang ShiSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China.
Binhao YangSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China.
Linli DaiSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China.
Hanbo YangSichuan Agricultural University, Chengdu, 611130, China.
Jinwu LiSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China.
Huimin ZhaoSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China.
Xingcui XiaoSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China.
Hongying GuoSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China.
Yunjie GuSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China. guyunjie123@gmail.com.
Jian PengSichuan Provincial Center for Identification and Evaluation of Forest Germplasm Resources/Ecological Conservation, Restoration and Resource Utilization in Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, 610081, China. pjsclky432@163.com.

Funding

2025 Basic Scientific Research Project of the Sichuan Academy of Forestry 2025JBKY09
6 · The paper itself

Abstract

backgroundOrmosia hosiei, commonly known as the "Chinese love bean tree" for its traditional symbolic association with love and longing in Chinese literature, is an economically and ecologically important leguminous tree species endemic to China, prized for its high-density hardwood and its vital ecological functions in subtropical forests. However, the limited availability of genomic resources has hindered in-depth molecular studies, constraining both genetic improvement efforts-such as those targeting wood formation-and conservation strategies.

resultsIn this study, we present a high-quality genome assembly of O. hosiei with a total size of 2.14 Gb and a scaffold N50 of 255.85 Mb, and annotated 39,309 protein-coding genes. Extensive identification and characterization of Gypsy and Copia LTR retrotransposon subfamilies revealed their major contribution to genome size expansion. Whole-genome duplication (WGD) analysis revealed that O. hosiei has experienced two WGD events: an ancient event shared broadly across leguminous species, and a more recent duplication likely shared within the Genistoid clade, including multiple Ormosia species. Furthermore, we identified 117 NAC and 176 MYB transcription factors in O. hosiei, including VND-like and MYB46-/83-like genes that are central regulators of secondary cell wall biosynthesis. These genes likely contribute to wood formation and the development of straight trunk architecture.

conclusionsOverall, the O. hosiei reference genome provides a valuable genomic resource for understanding legume evolution and offers essential support for functional genomics studies, molecular breeding, and conservation of this precious timber species endemic to China.

Indexed as

Chromosomes, PlantEvolution, MolecularFabaceaeGenome, PlantGenomicsTreesGene DuplicationMolecular Sequence AnnotationPhylogenyRetroelementsTranscription FactorsRetroelementsTranscription FactorsGenome evolutionOrmosia hosieiTranscription factorsWhole-genome duplication

Identifiers

PMID42464109
PMCPMC13663118

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.