Evidence map›Paper›PMID 42462716›Full record

ArticleCell host & microbe2026

Gabija restricts phage circularization and DNA replication.

Alex Hong, Miaoxi Liu, Alexis Truta, Alexander Talaie, Gerald R Smith, Joseph Bondy-Denomy

Abstract read
In one paragraph

Article in Cell host & microbe, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alex HongUC San Francisco, Department of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158, USA.
Miaoxi LiuUC San Francisco, Department of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158, USA.
Alexis TrutaUC San Francisco, Department of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158, USA.
Alexander TalaieUC San Francisco, Department of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158, USA.
Gerald R SmithFred Hutchinson Cancer Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA.
Joseph Bondy-DenomyUC San Francisco, Department of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158, USA. Electronic address: joseph.bondy-denomy@ucsf.edu.

Funding

Molecular analysis of genetic recombination and DNA break repairR35GM118120 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SMITH, GERALD R · 2016 to 2025
$9.3M
Genetic and Proteomic Approaches to Reveal Bacterial Vulnerabilities to Phage PredationR01AI167412 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joseph Bondy-Denomy · 2022 to 2026
$3.5M
NIAID NIH HHS R01 AI167412NIGMS NIH HHS R35 GM118120
6 · The paper itself

Abstract

Anti-bacteriophage systems such as restriction-modification and CRISPR-Cas have DNA substrate specificity mechanisms that enable the identification of invaders. How Gabija, a highly prevalent nuclease-helicase antiphage system, limits phage replication while executing self- vs. non-self-discrimination remains unknown. Here, we show that phage-encoded DNA end-binding proteins that antagonize host RecBCD sensitize phages to Gabija. When targeting a temperate lambda-like phage in Pseudomonas aeruginosa, Gabija prevents phage genome circularization and subsequent replication. DNA end-binding complexes, including a phage exonuclease and a single-stranded DNA (ssDNA)-annealing protein or Gam

Indexed as

DNA HelicasesDNA ReplicationPseudomonas aeruginosaPseudomonas PhagesViral ProteinsVirus ReplicationBacteriophage lambdaDNA-Binding ProteinsDNA, CircularDNA, Single-StrandedDNA, ViralExodeoxyribonuclease VGenome, ViralDNA-Binding ProteinsDNA, CircularDNA HelicasesDNA, Single-StrandedDNA, ViralExodeoxyribonuclease VViral Proteinsantiphage immunitybacteriophageDNA end-binding factorsDNA repair complexesDNA sensingDNA-targetingescape phageGabijahelicaselinear DNAnucleasePseudomonas aeruginosaRecBCD

Identifiers

PMID42462716
PMCPMC13502312

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.