Evidence map›Paper›PMID 42461986›Full record

ArticleScience (New York, N.Y.)2026

De novo design of orthogonal far-red, orange, and green fluorophore-binding proteins for multiplexed imaging.

Long Tran, Steffen Klein, David Juergens, Shajesh Sharma, Justin Decarreau, Gyu Rie Lee, Yujia Wang, Wei Chen, Asim K Bera, Alex Kang and 15 more

Abstract read
PubMed Publisher
In one paragraph

Article in Science (New York, N.Y.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. AbioRxiv : the preprint server for biology · 2026
    Article
  2. AI-GuidedJournal of the American Chemical Society · 2026
    Article
  3. Article
  4. De novo design of RNA and nucleoprotein complexes.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Long Tran *Department of Chemical Engineering, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9723-3529
Steffen Klein *Molecular Systems Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID 0000-0002-8046-0474
David Juergens *Institute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0001-6425-8391
Shajesh Sharma *Institute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9829-8631
Justin Decarreau *Institute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0001-8996-7741
Gyu Rie LeeInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0002-9119-5303
Yujia WangInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0002-7099-6283
Wei ChenInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0002-5255-4166
Asim K BeraInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9473-2912
Alex KangInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0001-5487-0499
Jon WoodsInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0002-5457-2464
Emily JoyceInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0009-0007-3230-1341
Dionne K VafeadosInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0002-2560-8907
Nicole RoullierInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0009-0004-8430-9538
Xinting LiInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0001-5559-7578
Bingxu LiuInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0002-3661-3410
Yang BoInstitute for Protein Design, University of Washington, Seattle, WA, USA.
Edin MuratspahićInstitute for Protein Design, University of Washington, Seattle, WA, USA.
Tim A BrownJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0000-0001-8941-7678
Jonathan B GrimmJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0000-0003-0331-4200
Ronak PatelJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0000-0002-6945-6466
Luke D LavisJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0000-0002-0789-6343
Julia MahamidMolecular Systems Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID 0000-0001-6968-041X
Linna AnInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9858-9105
David BakerInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7896-6217

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorescent proteins and small-molecule dyes offer complementary advantages for biological imaging: Proteins are amenable to genetic tagging, whereas dyes provide superior brightness and photostability. To combine these strengths, we used de novo protein design to generate small, nanomolar-affinity, high-selectivity binders (NovoTags) for three cell-permeable dyes spanning the visible spectrum. We show that the NovoTag fluorescent lifetimes can be tuned and demonstrate their application in lifetime- and wavelength-based multiplexed fluorescence imaging. We also designed a two-chain version (NovoSplit) that functions as a chemically induced dimerization system with fluorescent readout in living cells or as a minimally perturbing proximity probe in fixed cells. Our approach combines the advantages of fluorescent proteins and small-molecule dyes, thus expanding the toolkit for cellular imaging.

Indexed as

Fluorescent DyesLuminescent ProteinsMolecular ImagingOptical ImagingHeLa CellsHumansMicroscopy, FluorescenceProtein EngineeringFluorescent DyesLuminescent Proteins

Identifiers

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.