Evidence map›Paper›PMID 42461770›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

Virtual ultrasound machine operating in a GHz to MHz frequency range for particle-based biomedical simulations.

Urban Čoko, Tilen Potisk, Matej Praprotnik

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Urban ČokoTheory Department, National Institute of Chemistry, Ljubljana SI-1001, Slovenia.ORCID 0009-0009-9046-9868
Tilen PotiskTheory Department, National Institute of Chemistry, Ljubljana SI-1001, Slovenia.ORCID 0000-0002-8466-8993
Matej PraprotnikTheory Department, National Institute of Chemistry, Ljubljana SI-1001, Slovenia.ORCID 0000-0003-0825-1659

Funding

EC | European Research Council (ERC) 885155European High Performance Computing Joint Undertaking (EuroHPC) EHPC-REG-2025R02
6 · The paper itself

Abstract

Ultrasound-matter interactions underpin numerous biomedical and soft-matter applications, yet simulating these phenomena is challenging due to the large separation of viscous and sonic time scales. Continuum methods capture large-scale wave propagation but cannot resolve microscale interactions, while particle-based approaches offer molecular resolution but struggle with efficiency and stability at larger scales. We introduce a particle-based virtual ultrasound machine that uses a smoothed dissipative particle dynamics variant with an implicit pressure solver and a negative-pressure stabilization scheme, required to mimic acoustic propagation across medically relevant MHz-GHz frequencies. We demonstrate its capabilities by modeling the acoustophoresis of encapsulated microbubbles, a key mechanism in ultrasound-mediated drug delivery. Beyond this application, the approach establishes a generalizable platform for simulating wave-matter interactions in soft and biological materials, opening promising directions for computational studies of acoustics-driven phenomena in science and engineering.

Indexed as

UltrasonicsUltrasonic WavesAcousticsComputer SimulationDrug Delivery SystemsMicrobubblesacoustophoresiscompressibilityparticle-based simulationssmoothed dissipative particle dynamicsultrasound

Identifiers

PMID42461770
PMCPMC13389390

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.