Evidence map›Paper›PMID 42458204›Full record

ArticleBioinformatics (Oxford, England)2026

aiSysMet: AI-powered systems metabolomics for biomarker discovery.

Habtom Ressom, Linge Yan, Hongyu Ao, Xinran Zhang, Sara Hashemi, Rency Varghese, Bardia Nezami, Dawit Mengistu

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Habtom RessomOmicsCraft, Washington, DC, United States.
Linge YanOmicsCraft, Washington, DC, United States.
Hongyu AoOmicsCraft, Washington, DC, United States.
Xinran ZhangOmicsCraft, Washington, DC, United States.
Sara HashemiOmicsCraft, Washington, DC, United States.
Rency VargheseOmicsCraft, Washington, DC, United States.
Bardia NezamiOmicsCraft, Washington, DC, United States.
Dawit MengistuOmicsCraft, Washington, DC, United States.

Funding

ISYSMET: AI-POWERED PLATFORM FOR INTEGRATIVE ANALYSIS OFMULTIMODAL DATA75N91024C00093 · NCI · OMICSCRAFT, LLC · PI RESSOM, TOM · 2024 to 2024
$2.0M
Federal funds from the National Cancer Institute, National Institutes of HealthHHS 75N91024C00093NCI NIH HHS 75N91024C00093
6 · The paper itself

Abstract

motivationMetabolomics plays an essential role in the growing systems biology approaches to unravel the relationships between metabolites and diseases. Liquid chromatography-mass spectrometry (LC-MS) is central to this effort because it can profile many metabolites from limited material. Yet, in a typical untargeted LC-MS-based metabolomics study, the majority of detected peaks remain unannotated, largely due to incomplete spectral libraries and uncertainties in peak picking, alignment, and the handling of isotopes and adducts. These limitations hinder seamless integration with other omics layers.

resultsWe developed an AI-powered platform (aiSysMet) that uses statistical, machine learning, and deep learning methods for metabolomics data processing, metabolite annotation, and integrative analysis of multi-omics data. The platform's interactive and modular web interface allows users to easily build data analysis pipelines that can be executed in the cloud. AVAILABILITY: aiSysMet is freely available for non-commercial users on https://tools.omicscraft.com/aiSysMet.

Indexed as

Artificial IntelligenceBiomarkersMetabolomicsSoftwareLiquid Chromatography-Mass SpectrometryMachine LearningMultiomicsBiomarkers

Identifiers

PMID42458204
PMCPMC13412159

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.