Evidence map›Paper›PMID 42457709›Full record

ArticleNature communications2026

Direct coupling of nod factor signaling to vesicular trafficking initiates legume nodulation.

Jae Hyo Song, Mengran Yang, Gabriel Lemes Jorge, Daewon Kim, Shin-Ichiro Agake, Jeremiah Traeger, Dehong Hu, Jay J Thelen, Gary Stacey

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jae Hyo Song *C.S. Bond Life Science Center, Division of Plant Sciences and Technology, University of Missouri, Columbia, MO, USA.
Mengran Yang *C.S. Bond Life Science Center, Division of Plant Sciences and Technology, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0001-5820-9868
Gabriel Lemes JorgeDivision of Biochemistry and Interdisciplinary Plant Group, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA.
Daewon KimC.S. Bond Life Science Center, Division of Plant Sciences and Technology, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0001-5669-1451
Shin-Ichiro AgakeC.S. Bond Life Science Center, Division of Plant Sciences and Technology, University of Missouri, Columbia, MO, USA.
Jeremiah TraegerEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Dehong HuEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0002-3974-2963
Jay J ThelenDivision of Biochemistry and Interdisciplinary Plant Group, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0001-5995-1562
Gary StaceyC.S. Bond Life Science Center, Division of Plant Sciences and Technology, University of Missouri, Columbia, MO, USA. staceyg@missouri.edu.ORCID http://orcid.org/0000-0001-5914-2247

Funding

DORN1 defines a new family of receptor kinase purinoreceptors (P2K)R01GM121445 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI STACEY, GARY · 2017 to 2024
$2.5M
DOE | SC | Biological and Environmental Research (BER) DE-SC0023142 (JJT)Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01GM121445MEXT | Japan Society for the Promotion of Science (JSPS) JP23KK0107National Research Foundation of Korea (NRF) RS-2020-NR049590National Research Foundation of Korea (NRF) RS-2026-25492946National Science Foundation (NSF) IOS-1829365National Science Foundation (NSF) IOS-2048410NIGMS NIH HHS R01 GM121445
6 · The paper itself

Abstract

Legume-rhizobium symbiosis requires coordinated receptor signaling and membrane trafficking to initiate infection thread formation in root hairs. Here, we identify the soybean Qa-SNARE GmSYNTAXIN111a (GmSYP111a), a close paralog of the cytokinesis-associated protein KNOLLE, as a critical regulator of symbiotic infection. Kinase-client assays and in vivo immunoprecipitation-mass spectrometry showed that GmSYP111a is phosphorylated by the receptor kinase GmSymRKβ at Ser-8 and Ser-128. BiFC, co-immunoprecipitation, and kinase assays validated the interaction and phosphorylation. Nod factor perception promoted clathrin-mediated endocytosis of the GmSymRKβ-GmSYP111a complex and its relocalization to intracellular vesicles. Structural modeling and interaction assays suggest that dual phosphorylation exposes an endocytic motif that recruits the TPLATE adaptor; accordingly, non-phosphorylatable mutations impaired internalization, whereas phosphomimetic substitutions induced endocytosis without rhizobial stimulation. GmSYP111a also interacted with VAMP72, linking endocytic recruitment to vesicle fusion. Genetic analyses in soybean and Lotus japonicus established a conserved requirement for GmSYP111a in nodule initiation. These findings define a phosphorylation-dependent SNARE switch that couples Nod factor signaling to membrane trafficking during legume nodulation.

Indexed as

Glycine maxPlant ProteinsPlant Root NodulationQa-SNARE ProteinsEndocytosisLipopolysaccharidesLotusPhosphorylationPlant RootsRhizobiumSignal TransductionSymbiosisLipopolysaccharidesNod factor, Rhizobium leguminosarumPlant ProteinsQa-SNARE Proteins

Identifiers

PMID42457709
PMCPMC13490504

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.