Evidence map›Paper›PMID 42457688›Full record

ArticleNature communications2026

Cellular hallmarks and aging clock of the human lung parenchyma.

Ke Xu, Grace S Kim, Atharva Bhagwat, Sepideh E Meimand, Vignesh V Venkat, Giang Pham, Jing Zhang, Jamshid Abdul-Ghafar, Mohamad D Bairakdar, Komal Dolasia and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Ke Xu *Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.ORCID http://orcid.org/0000-0002-0621-4507
Grace S Kim *Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.
Atharva Bhagwat *Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.ORCID http://orcid.org/0009-0004-7311-0283
Sepideh E MeimandDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.
Vignesh V VenkatDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.
Giang PhamDepartment of Immunology and Immunotherapy, ISMMS, New York, NY, USA.
Jing ZhangDepartment of Immunology and Immunotherapy, ISMMS, New York, NY, USA.
Jamshid Abdul-GhafarDepartment of Pathology, Molecular and Cell-Based Medicine, ISMMS, New York, NY, USA.ORCID http://orcid.org/0000-0002-6575-8870
Mohamad D BairakdarDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.
Komal DolasiaDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.
Isha R SahasrabudheDepartments of Medicine and Cell, Developmental, and Regenerative Biology, ISMMS, New York, NY, USA.
Alter KlausnerDivision of Pulmonary, Critical Care and Sleep Medicine, ISMMS, New York, NY, USA.
Yijia ChenDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.
Thinh T NguyenDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.
Bruno GiottiDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA.
Rachel BrodyDepartment of Pathology, Molecular and Cell-Based Medicine, ISMMS, New York, NY, USA.ORCID http://orcid.org/0000-0001-9280-517X
So-Jin KimDivision of Pulmonary, Critical Care and Sleep Medicine, ISMMS, New York, NY, USA.ORCID http://orcid.org/0000-0003-2413-2609
Jaymin J KathiriyaDepartments of Medicine and Cell, Developmental, and Regenerative Biology, ISMMS, New York, NY, USA.ORCID http://orcid.org/0000-0003-1807-8570
Daniel J PulestonDepartment of Immunology and Immunotherapy, ISMMS, New York, NY, USA.
Patty J LeeDivision of Pulmonary, Critical Care and Sleep Medicine, ISMMS, New York, NY, USA.ORCID http://orcid.org/0000-0001-9906-1628
Alexander M TsankovDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY, USA. alexander.tsankov@mssm.edu.ORCID http://orcid.org/0000-0002-7955-4414

Funding

The Duke Senescent Cell Evaluations in Normal Tissues (SCENT) Mapping CenterU54AG075936 · NIA · DUKE UNIVERSITY · PI CHAN, CLIBURN C · 2021 to 2025
$12.7M
Dissecting the cellular and spatial tissue clock of the human lung and peripheral bloodR01AG089078 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Alexander Minchev Tsankov · 2025 to 2026
$1.6M
Understanding the effect of aging on the lung adenocarcinoma tumor microenvironmentR21AG095627 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI TSANKOV, ALEXANDER MINCHEV · 2025 to 2025
$464k
NIA NIH HHS R01 AG089078NIA NIH HHS R21 AG095627NIA NIH HHS U54 AG075936U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01 AG089078-01A1U.S. Department of Health & Human Services | NIH | Office of Strategic Coordination (OSC) U54 AG075936-01
6 · The paper itself

Abstract

Aging affects lung function, predisposing older adults to respiratory diseases; however, the cellular and molecular mechanisms of lung aging are not fully understood. Leveraging single-cell and spatial transcriptomics data from 184 and 70 lung parenchyma samples, respectively, we present an analytical platform to dissect the cell composition, gene expression modules, and regulatory changes linked to multiple hallmarks of lung aging. Our findings show cell type-specific age-association of senescence markers and a decline in alveolar cell proliferation, autocrine WNT signaling, and stemness indicators with advancing age. Analysis of myeloid cells reveals a global reduction in macrophage subsets and a surge in mitochondrial dysfunction and inflammatory signaling. In contrast, lung parenchyma T cells expand with age and exhibit heightened interferon gamma expression, cytotoxic activity, and exhaustion in older lung and blood samples, indicative of age-related immune dysfunction. Cell interaction and spatial analysis demonstrate aberrant myeloid-T cell cross-talk, leading to an increase in T cell chemotaxis and activation. Lastly, we use machine learning to predict lung biological age and identify putative biomarkers of lung aging and disease risk.

Indexed as

AgingCellular SenescenceLungCell ProliferationHumansMyeloid CellsSpatial TranscriptomicsT-Cell ExhaustionT-LymphocytesTranscriptomeWnt Signaling Pathway

Identifiers

PMID42457688
PMCPMC13490560

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.