Evidence map›Paper›PMID 42454492›Full record

ArticleThe Journal of clinical investigation2026

Gut microbe-derived short-chain fatty acids regulate alphavirus arthritis and macrophage activation in mice.

Fang R Zhao, Maksim Kleverov, Emma S Winkler, Russell B Williams, Hana Janova, Lindsay Droit, Leran Wang, Ting-Ting Li, Leah Heath, Ana Jung and 10 more

Abstract read
In one paragraph

Article in The Journal of clinical investigation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Fang R ZhaoDepartment of Medicine and.
Maksim KleverovDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.
Emma S WinklerDepartment of Medicine and.
Russell B WilliamsBioanalytical Chemistry Facility, Donald Danforth Plant Science Center, St. Louis, Missouri, USA.
Hana JanovaDepartment of Medicine and.
Lindsay DroitDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.
Leran WangThe Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri, USA.
Ting-Ting LiWeill Cornell Medicine, Cornell University, New York, New York, USA.
Leah HeathThe Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri, USA.
Ana JungThe Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri, USA.
Matthias MackDepartment of Nephrology, University Hospital Regensburg, Regensburg, Germany.
Megan T BaldridgeDepartment of Medicine and.
Thaddeus S StappenbeckDepartment of Inflammation and Immunity, Cleveland Clinic, Cleveland, Ohio, USA.
Larissa B ThackrayDepartment of Medicine and.
Chyi-Song HsiehDepartment of Medicine and.
Scott A HandleyDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.
Chun-Jun GuoWeill Cornell Medicine, Cornell University, New York, New York, USA.
Michael A FischbachDepartment of Bioengineering and ChEM-H, Stanford University, Stanford, California, USA.
Maxim N ArtyomovDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.
Michael S DiamondDepartment of Medicine and.

Funding

Structure-Function Analysis of Mxra8 Interaction with Alphaviruses.R01AI143673 · NIAID · WASHINGTON UNIVERSITY · PI DIAMOND, MICHAEL S, FREMONT, DAVED H. · 2019 to 2025
$6.5M
Gut Microbiota Modulation of Chikungunya Virus Infection and PathogenesisR01AI152484 · NIAID · WASHINGTON UNIVERSITY · PI DIAMOND, MICHAEL S, FISCHBACH, MICHAEL ANDREW · 2021 to 2025
$3.2M
Dietary Regulation of Intestinal Inflammation and RepairR01DK132244 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID, GUO, CHUN-JUN · 2022 to 2025
$2.7M
Molecular mechanisms behind microbiota regulation of host amino acid and glucose homeostasisR01DK135816 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI Chun-Jun Guo · 2023 to 2026
$1.9M
Role of the gut barrier in inflammatory arthritisK08AR084597 · NIAMS · WASHINGTON UNIVERSITY · PI Fang Zhao · 2024 to 2026
$432k
Regulation of Antiviral Responses in Plasmacytoid Dendritic Cells to Chikungunya Virus by the Gut MicrobiotaF30AI152327 · NIAID · WASHINGTON UNIVERSITY · PI WINKLER, EMMA SUENING · 2021 to 2022
$84k
NIAID NIH HHS F30 AI152327NIAID NIH HHS R01 AI143673NIAID NIH HHS R01 AI152484NIAMS NIH HHS K08 AR084597NIDDK NIH HHS R01 DK132244NIDDK NIH HHS R01 DK135816
6 · The paper itself

Abstract

Oral antibiotics can predispose to joint inflammation, but this phenomenon remains poorly understood. Here, we leverage mouse models of alphavirus-induced arthritis to investigate the roles of gut commensals, metabolites, and host immune mechanisms in promoting musculoskeletal inflammation. Mice treated with a short course of oral antibiotics exhibited worsened arthritis after chikungunya (CHIKV) or Mayaro virus infections. This phenotype was associated with loss of short-chain fatty acids (SCFAs), greater intestinal permeability, and activation of gut-associated immune cells and required TLR4 signaling, MyD88 expression, monocytes, antigen-specific and bystander CD4+ T cells, and proinflammatory cytokines. Administration of exogenous SCFAs or colonization of mice with bacterial species that generate SCFAs mitigated CHIKV-induced joint inflammation. scRNA-seq revealed that gut-derived SCFAs ameliorate the inflammatory phenotype of synovial CD4+ T cells, infiltrating monocytes, and resident osteoclast-like cells. Thus, antibiotic-triggered gut dysbiosis exacerbates alphavirus arthritis by shaping the inflammatory profile of both infiltrating and resident immune cells in joint tissues.

Indexed as

Alphavirus InfectionsArthritis, ExperimentalArthritis, InfectiousChikungunya FeverChikungunya virusFatty Acids, VolatileGastrointestinal MicrobiomeMacrophage ActivationAnimalsAnti-Bacterial AgentsDysbiosisMiceMice, Inbred C57BLToll-Like Receptor 4Anti-Bacterial AgentsFatty Acids, VolatileToll-Like Receptor 4Adaptive immunityImmunologyInfectious diseaseInnate immunityMicrobiology

Identifiers

PMID42454492
PMCPMC13367971

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.