Evidence map›Paper›PMID 42443172›Full record

ArticleNature communications2026

Integrative structural interactomics reveals protein organization and structure in a giant virus.

Lars Mühlberg, Julia Ruta, Vasilii Mikirtumov, Raymond Burton-Smith, Kazuyoshi Murata, Mikhail Kudryashev, Kenta Okamoto, Boris Bogdanow, Fan Liu

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lars MühlbergDepartment of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.ORCID 0009-0008-8046-007X
Julia RutaDepartment of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.ORCID 0009-0007-0524-6885
Vasilii MikirtumovIn situ Structural Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany.ORCID 0009-0004-6849-4825
Raymond Burton-SmithNational Institute for Physiological Sciences (NIPS), National Institute of Natural Sciences (NINS), Okazaki, Japan.ORCID 0000-0002-1535-6419
Kazuyoshi MurataNational Institute for Physiological Sciences (NIPS), National Institute of Natural Sciences (NINS), Okazaki, Japan.ORCID 0000-0001-9446-3652
Mikhail KudryashevIn situ Structural Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany.ORCID 0000-0003-3550-6274
Kenta OkamotoLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-4858-1196
Boris BogdanowDepartment of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany. boris.bogdanow@charite.de.ORCID 0000-0002-9634-7353
Fan LiuDepartment of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany. fliu@fmp-berlin.de.ORCID 0000-0002-2358-549X

Funding

Carl Tryggers Stiftelse för Vetenskaplig Forskning (Carl Trygger Foundation) CTS23:2703Deutsche Forschungsgemeinschaft (German Research Foundation) KU 3222/3-1Deutsche Forschungsgemeinschaft (German Research Foundation) LI 3260/6-1EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) ERC-STG-2020 No. 949184Japan Agency for Medical Research and Development (AMED) 24ama121005j0003Leibniz-Gemeinschaft (Leibniz Association) Leibniz-Wettbewerb P70/2018Vetenskapsrådet (Swedish Research Council) 2018-03387 and 2023-01857
6 · The paper itself

Abstract

Giant viruses are large DNA viruses that infect unicellular and multicellular eukaryotes and form exceptionally large extracellular particles. (Meta)genomics and (meta)transcriptomics have provided insight into their diverse coding repertoire, but many of the proteins remain to be characterized as they lack homology with known proteins. Here, we integrate cross-linking mass spectrometry, quantitative proteomics, computational tools and cryo-EM data to characterize the protein architecture of intact melbournevirus particles. Based on this, we allocate 88 viral proteins to different virion sub-compartments and propose topologies of 25 inner membrane proteins. We assign eight components of the capsid in cryo-EM data, including proteins that tether the capsid shell to the membrane, reflecting key points in virion maturation. The data provide a valuable resource and demonstrate the power of an integrative approach to gain system-level structural insights into a poorly characterized biological system.

Indexed as

Giant VirusesViral ProteinsCapsidCapsid ProteinsCryoelectron MicroscopyMass SpectrometryProteomicsVirionCapsid ProteinsViral Proteins

Identifiers

PMID42443172
PMCPMC13365592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.