Evidence map›Paper›PMID 42441665›Full record

ArticlePLoS pathogens2026

Pervasive HIV recombination limits the utility of circulating recombinant form nomenclature.

Heather E Grant, Abayomi S Olabode, Dorothea Seiler Vellame, Art F Y Poon, Andrew J Leigh Brown, David L Robertson

Abstract read
In one paragraph

Article in PLoS pathogens, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Heather E GrantInstitute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom.
Abayomi S OlabodeDepartment of Pathology & Laboratory Medicine, Western University, London, Canada.
Dorothea Seiler VellameUK Human Functional Genomics Initiative, University of Exeter, Exeter, United Kingdom.ORCID 0000-0002-6905-0474
Art F Y PoonDepartment of Pathology & Laboratory Medicine, Western University, London, Canada.
Andrew J Leigh BrownInstitute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom.
David L RobertsonMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.ORCID 0000-0001-6338-0221

Funding

Modeling Epidemic Infectious Diseases Using Sequence AnalysisU01GM110749 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POND, SERGEI L KOSAKOVSKY · 2014 to 2018
$3.0M
NIGMS NIH HHS U01 GM110749
6 · The paper itself

Abstract

The naming of HIV-1 circulating recombinant forms (CRFs)-descendent viruses from the same intersubtype recombination events, is along with the designation of 'subtypes' and 'groups', routinely used to track HIV-1 diversity. However, we argue that continuing to designate all detected CRFs as distinct entities is biologically unjustified, as many represent recombinants of limited epidemiological significance. Indeed, the mechanistic underpinning of HIV-1 recombination highlights the arbitrary nature of naming these incidental recombinants, the majority of which are rarely detected again. This underlines the need to prioritise taxonomically meaningful clades, with a focus on biological significance such as emergence events associated with significant epidemiological spread, phenotypic properties or transmission advantage.

Indexed as

HIV-1HIV InfectionsRecombination, GeneticTerminology as TopicHumans

Identifiers

PMID42441665
PMCPMC13362105

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.