Evidence map›Paper›PMID 42441424›Full record

ArticleeLife2026

Experimental verification of the error minimization theory using non-standard genetic codes constructed in vitro.

Ryota Miyachi, Norikazu Ichihashi

Abstract read
In one paragraph

Article in eLife, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Ryota MiyachiDepartment of Life Science, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0009-0001-2001-5272
Norikazu IchihashiDepartment of Life Science, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0000-0001-7087-2718

Funding

Grants-in-Aid for Scientific Research (KAKENHI) 22H05402Grants-in-Aid for Scientific Research (KAKENHI) 23KJ0815Grants-in-Aid for Scientific Research (KAKENHI) 24H01111Japan Science and Technology Agency JPMJCR20S1
6 · The paper itself

Abstract

All living systems use an almost identical standard genetic code (SGC), in which 20 amino acids are assigned non-randomly. According to the error minimization theory, amino acids are arranged to minimize the mutational effect on protein function, while experimental verification remains limited. Here, we constructed 10 non-standard genetic codes (non-SGCs) in vitro by reassigning three amino acids (Ala, Ser, and Leu) in vacant codons of the minimal genetic code consisting of 21 tRNAs. Most of these non-SGCs have a higher cost of amino acid replacement than the SGC, calculated based on three amino acid properties: polar requirement (PR), molecular volume (MV), and hydropathy index (HI). The protein function of three reporter genes expressed using these non-SGCs decreased similarly when random mutations were introduced into the genes, implying that the effect of mutations was similar across all the non-SGCs tested here. This result provides direct experimental evidence that mutational robustness does not significantly change in individual reporter protein activity within the range of mutational cost tested in this study (Cost

Indexed as

Amino AcidsGenetic CodeCodonEscherichia coliGenes, ReporterMutationRNA, TransferAmino AcidsCodonRNA, Transferbiochemistrycell-freechemical biologycomputational biologyE. coligenetic codemutationreconstituted systemsystems biologytRNA

Identifiers

PMID42441424
PMCPMC13363220

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.