Evidence map›Paper›PMID 42439616›Full record

ArticleCells2026

Comparative Study of Single-Cell and Bulk RNA Sequencing Data from Metastatic Bone Marrow Neuroblastoma Samples.

Sanja Aveic, Alessandro Davini, Sara Menegazzo, Marcella Pantile, Carlo Zanon, Anna Corrà, Giovanni Faggin, Diana Corallo, Danilo Pellin, Luisa Santoro and 9 more

Abstract readComparative Study
In one paragraph

Article in Cells, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Sanja AveicPediatric Hematology, Oncology and Hematopoietic Cell & Gene Therapy Research Area, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.ORCID 0000-0002-3886-4360
Alessandro DaviniPediatric Hematology, Oncology and Hematopoietic Cell & Gene Therapy Research Area, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.ORCID 0009-0004-8504-3604
Sara MenegazzoPediatric Hematology, Oncology and Hematopoietic Cell & Gene Therapy Research Area, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.ORCID 0000-0002-4964-542X
Marcella PantilePediatric Hematology, Oncology and Hematopoietic Cell & Gene Therapy Research Area, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.
Carlo ZanonBioinformatics Core Service, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.
Anna CorràBioinformatics Core Service, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.
Giovanni FagginDepartment of Women and Child's Health, University of Padua, 35128 Padua, Italy.ORCID 0000-0002-5443-5638
Diana CoralloPediatric Hematology, Oncology and Hematopoietic Cell & Gene Therapy Research Area, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.
Danilo PellinGene Therapy Program, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA 02215, USA.
Luisa SantoroAnatomia Patologica, Azienda Ospedaliera Padova, 35121 Padua, Italy.
Chiara FrassonFlow Cytometry Core Service, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.
Angelica ZinDepartment of Women and Child's Health, University of Padua, 35128 Padua, Italy.ORCID 0000-0002-7104-273X
Samuela FrancescatoDepartment of Women and Child's Health, University of Padua, 35128 Padua, Italy.
Bartolomeo RossiDepartment of Women and Child's Health, University of Padua, 35128 Padua, Italy.
Ioana Ancuta NeculaescuAnatomia Patologica, Azienda Ospedaliera Padova, 35121 Padua, Italy.
Martina PigazziPediatric Hematology, Oncology and Hematopoietic Cell & Gene Therapy Research Area, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.ORCID 0000-0002-4793-5263
Barbara BuldiniPediatric Hematology, Oncology and Hematopoietic Cell & Gene Therapy Research Area, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.
Elisabetta ViscardiDepartment of Women and Child's Health, University of Padua, 35128 Padua, Italy.
Alessandra BiffiPediatric Hematology, Oncology and Hematopoietic Cell & Gene Therapy Research Area, Pediatric Research Institute, Città della Speranza Foundation ETS, 35127 Padua, Italy.

Funding

Città della Speranza Foundation 20/08 CDSItalian Association for Cancer Research 26484
6 · The paper itself

Abstract

Neuroblastoma is characterized by frequent involvement of bone marrow (BM) as a site of cell dissemination and spread. In this study, single-cell RNA sequencing (scRNA-seq) was used to analyze the cellular heterogeneity of a subset of metastatic BM samples collected at initial diagnosis. Comparison of the single-cell data with bulk RNA sequencing further refined the analysis. An enrichment of regulatory T cells relative to a healthy control and activation of the CD24, CD47, and CD200 "don't eat me" signals were documented. Computational analyses highlighted communication between neuroblastoma and myeloid cells via the amyloid precursor protein (APP) and midkine (MK) signaling networks. Within neuroblastoma cells, mutually exclusive adrenergic and transitory cell states were identified, and ten sub-clusters were denoted. In addition, common and unique tumor cell antigens were investigated. CNTFR and CHRNA3, as high-ranking candidates, were validated, confirming their strong selectivity for neuroblastoma cells. Taken together, these findings support the existence of a significant tumor-dependent modulation of the BM ecosystem, which should be considered when introducing immunotherapy. Furthermore, they highlight the potential to investigate new antigens at the single-cell resolution.

Indexed as

Bone Marrow NeoplasmsNeuroblastomaSequence Analysis, RNASingle-Cell AnalysisHumansSingle-Cell Gene Expression Analysisbone marrow metastasisneuroblastomasingle celltumor antigens

Identifiers

PMID42439616
PMCPMC13359927

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.