Evidence map›Paper›PMID 42430363›Full record

ArticlePloS one2026

Evolutionary patterns of the mitochondrial control region in vertebrates: A large-scale comparative analysis.

Mauricio Ochoa Capera, Natalia S Medina, Paula Montaña-Lozano, Manuela Moreno-Carmona, Antonio Baeza, Carlos Prada-Quiroga

Abstract readComparative Study
In one paragraph

Article in PloS one, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mauricio Ochoa CaperaDepartamento de Biología, Facultad de Ciencias, Universidad del Tolima, Tolima, Colombia.
Natalia S MedinaDepartamento de Biología, Facultad de Ciencias, Universidad del Tolima, Tolima, Colombia.
Paula Montaña-LozanoDepartamento de Biología, Facultad de Ciencias, Universidad del Tolima, Tolima, Colombia.
Manuela Moreno-CarmonaDepartamento de Biología, Facultad de Ciencias, Universidad del Tolima, Tolima, Colombia.
Antonio BaezaDepartment of Biological Sciences, Clemson University, Clemson, South Carolina, United States of America.
Carlos Prada-QuirogaDepartamento de Biología, Facultad de Ciencias, Universidad del Tolima, Tolima, Colombia.ORCID https://orcid.org/0000-0001-5201-9502

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mitochondrial control region (CR) is the largest non-coding region in the vertebrate mitogenome and contains essential elements for replication and transcription. Despite its functional relevance, its evolutionary dynamics remain poorly understood. Here, we analyzed 5,235 complete vertebrate CRs spanning 11 classes to investigate how conserved sequences blocks (CSBs) and Extended Termination-Associated sequences (ETAS) shaped CR evolution. We hypothesized that CR length is positively associated with repeat accumulation, with tetrapods exhibiting longer and more complex CRs than fishes, while core elements remain conserved. Our analyses revealed marked inter- and intra-class variability, with longer CRs in tetrapods (1,283.27 ± 489.6 bp) than in fishes (969.25 ± 239.5 bp). Duplication events were restricted to tetrapods, especially birds and reptiles. Nucleotide composition was heterogeneous among orders, and structural divergence of CSBs was inferred across lineages. Repetitive elements were present in ~43% of CRs, with their abundance strongly correlated with CR length. Importantly, longer CRs were associated with higher GC content and greater variation in copy number of ETAS and CSBs. These results demonstrate that mitogenome CR expansion in vertebrates is largely driven by repeat proliferation, whereas key motifs required for replication and transcription are retained. We further identify lineage-specific trends, including pronounced CR elongation in amphibians and reptiles, contrasted with progressive reduction and simplification in birds and mammals. Our study provides the first comprehensive comparative framework of vertebrate CR evolution, highlighting how repetitive elements, conserved motifs, and nucleotide composition jointly contribute to both functional regulation and lineage-specific diversification.

Indexed as

DNA, MitochondrialEvolution, MolecularGenome, MitochondrialMitochondriaVertebratesAnimalsBase CompositionConserved SequencePhylogenyDNA, Mitochondrial

Identifiers

PMID42430363
PMCPMC13353940

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.