Evidence map›Paper›PMID 42427722›Full record

ArticlebioRxiv : the preprint server for biology2026

Transcriptional divergence of the zebrafish

Po-Shu Tu, John D Thompson, Oscar A Davalos, Gloria D Ligunas, Nimra Khurram, Katrina K Hoyer, C Ben Lovely, Stephanie Woo, Stefan C Materna

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Po-Shu TuQuantitative and Systems Biology Graduate Program, University of California Merced, Merced, California, 95343, USA.ORCID 0000-0003-0494-3658
John D ThompsonDepartment of Molecular and Cell Biology, University of California Merced, Merced, California, 95343, USA.ORCID 0000-0003-0248-8743
Oscar A DavalosQuantitative and Systems Biology Graduate Program, University of California Merced, Merced, California, 95343, USA.ORCID 0000-0002-9608-5701
Gloria D LigunasQuantitative and Systems Biology Graduate Program, University of California Merced, Merced, California, 95343, USA.ORCID 0009-0003-0110-1794
Nimra KhurramQuantitative and Systems Biology Graduate Program, University of California Merced, Merced, California, 95343, USA.ORCID 0009-0008-5765-3762
Katrina K HoyerQuantitative and Systems Biology Graduate Program, University of California Merced, Merced, California, 95343, USA.ORCID 0000-0001-5443-0733
C Ben LovelyDepartment of Biochemistry and Molecular Genetics, University of Louisville, Kentucky, USA.ORCID 0000-0002-7838-5823
Stephanie WooQuantitative and Systems Biology Graduate Program, University of California Merced, Merced, California, 95343, USA.ORCID 0000-0002-1238-8167
Stefan C MaternaQuantitative and Systems Biology Graduate Program, University of California Merced, Merced, California, 95343, USA.ORCID 0000-0003-1737-2479

Funding

An ethanol-sensitive, Bmp-PCP dependent pathway regulating endoderm cell behaviorsR01AA031043 · NIAAA · UNIVERSITY OF LOUISVILLE · PI Charles Benjamin Lovely · 2024 to 2026
$1.4M
Tissue-specific labeling of endogenous proteins with split fluorescent proteinsR15HD102829 · NICHD · UNIVERSITY OF CALIFORNIA, MERCED · PI WOO, STEPHANIE · 2020 to 2022
$578k
Experimental and mathematical modeling of CD8 T cell dynamics in autoimmune diseaseR15HL146779 · NHLBI · UNIVERSITY OF CALIFORNIA, MERCED · PI HOYER, KATRINA K · 2018 to 2020
$554k
NHLBI NIH HHS R15 HL146779NIAAA NIH HHS R01 AA031043NICHD NIH HHS R15 HD102829
6 · The paper itself

Abstract

The endoderm is specified at the onset of gastrulation and subsequently undergoes extensive migration before forming an epithelial sheet that gives rise to multiple organs, including the gut and respiratory tracts. Although the gene regulatory network underlying endoderm specification and the later processes that regionalize the gut are increasingly well understood, comparatively little is known about the intervening developmental events. Using single cell transcriptomics, we profiled the zebrafish

Indexed as

dorsal forerunner cellsendodermgastrulationpatterningsox17 lineagespecification

Identifiers

PMID42427722
PMCPMC13344959

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.