Evidence map›Paper›PMID 42423888›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

Python-Based Interactive Notebooks for Teaching AI and Data Science to Undergraduate Students in the Life Sciences.

Kriti Shukla, Elizabeth Brunk

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Kriti ShuklaDepartment of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Elizabeth BrunkDepartment of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. elizabeth_brunk@med.unc.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This chapter presents a reproducible, cloud-based framework for integrating Python-driven data analysis into a large-enrollment undergraduate biochemistry course. Rapid growth in technologies has transformed biochemistry into a data-intensive discipline, yet most life-science students receive little formal training in computational skills. To address this gap, we developed a set of interactive Jupyter notebooks that embed introductory coding, protein structure visualization, metabolic modeling, and simple multi-omics analysis directly within the core biochemistry curriculum. The workflow is delivered entirely through the CyVerse Discovery Environment, which provides browser-based JupyterLab sessions with preconfigured Python environments, version-controlled notebooks, and standardized datasets. This infrastructure eliminates the need for local installation, supports hundreds of simultaneous users, and ensures consistent execution across diverse student hardware. The notebooks follow a scaffolded learn-apply-reflect design that links biochemical concepts with incremental coding tasks, enabling students with no prior experience to manipulate real datasets, generate visualizations, and interpret quantitative patterns. Assessment using validated pre/post surveys across more than 1000 matched responses demonstrated substantial gains in students' confidence with coding and their ability to interpret omics data. The protocol outlined here offers a scalable, equitable model for incorporating computational literacy into biochemistry education and can be readily adapted for related life-science courses.

Indexed as

Artificial IntelligenceBiological Science DisciplinesData ScienceSoftwareBiochemistryCurriculumHumansStudentsTeachingArtificial intelligenceBiochemistryData scienceEducationInformaticsJupyterMachine learningOmicsPython

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.