Evidence map›Paper›PMID 42423307›Full record

ArticleNucleic acids research2026

Ku70-SAP domain has an overlapping function with DNA-PKcs in limiting the lateral movement of the Ku ring along DNA.

Yimeng Zhu, Sagun Jonchhe, Hanwen Zhang, Brian J Lee, Xiaohui Lin, Shingo Fujii, Angelina Li, Duc-Duy Vu, Kyle J Wang, Eli Rothenberg and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
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  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Yimeng ZhuInstitute for Cancer Genetics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, United States.
Sagun JonchheDepartment of Biochemistry and Molecular Pharmacology, School of Medicine, New York University, New York, NY 10016, United States.
Hanwen ZhangInstitute for Cancer Genetics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, United States.
Brian J LeeInstitute for Cancer Genetics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, United States.
Xiaohui LinInstitute for Cancer Genetics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, United States.
Shingo FujiiDepartment of Genome Integrity, Cancer Research Center of Marseille, CNRS UMR7258, Inserm U1068, Institut Paoli-Calmettes, Aix Marseille University, 13273 Marseille, France.
Angelina LiInstitute for Cancer Genetics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, United States.
Duc-Duy VuDépartement de Chimie, LBM, CNRS UMR 7203, École Normale Supérieure, PSL University, Sorbonne University, 75005 Paris, France.
Kyle J WangInstitute for Cancer Genetics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, United States.
Eli RothenbergDepartment of Biochemistry and Molecular Pharmacology, School of Medicine, New York University, New York, NY 10016, United States.
Mauro ModestiDepartment of Genome Integrity, Cancer Research Center of Marseille, CNRS UMR7258, Inserm U1068, Institut Paoli-Calmettes, Aix Marseille University, 13273 Marseille, France.ORCID 0000-0002-4964-331X
Shan ZhaInstitute for Cancer Genetics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, United States.ORCID 0000-0002-6568-1818

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
The Role of CTIP in Lymphocyte Development and LymphomagenesisP01CA174653 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GAUTIER, JEAN · 2014 to 2024
$17.6M
The role of ATM in the suppression of lymphoid malignancyR01CA158073 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Shan Zha · 2011 to 2026
$5.7M
The role of HPF1 in radiation and genotoxic cancer therapyR01CA293675 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Shan Zha · 2024 to 2026
$3.0M
The role of DNA-PKcs in DNA repair, lymphocyte development, RNA metabolism and tumor suppressionR01CA275184 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Shan Zha · 2022 to 2026
$2.7M
ANRCancer Research InstituteColumbia UniversityLeukemia Lymphoma SocietyNCI NIH HHS P01 CA174653NCI NIH HHS P30 CA013696NCI NIH HHS P30CA013696NCI NIH HHS R01 CA158073NCI NIH HHS R01 CA275184NCI NIH HHS R01 CA293675NIH HHS 5R01CA158073NIH HHS P01CA174653NIH HHS R01CA21595NIH HHS R01CA275184NIH HHS R01CA293675
6 · The paper itself

Abstract

Non-homologous end-joining (NHEJ) is a major double-stranded DNA (dsDNA) break repair pathway essential for V(D)J recombination during lymphocyte development. The Ku70/Ku80 heterodimer (Ku) initiates NHEJ by encircling dsDNA ends and recruiting DNA-PKcs. Ku70 in plants and mammals acquired a C-terminal SAP domain implicated in nucleic acid binding. Here, we show that in murine models, the SAP domain is dispensable for Ku stability and recruitment to DNA breaks. Unlike Ku70-/- mice, Ku70ΔSAP/ΔSAP mice exhibit normal lymphocyte development despite mild radiation sensitivity. Structural modeling places the SAP domain in adjacent DNA grooves, where it can restrict Ku's lateral movement along dsDNA. Correspondingly, in mice lacking DNA-PKcs that caps the ends, Ku70ΔSAP reduces T cell counts and deletion sizes, consistent with Ku translocating off DNA. Moreover, SAP deletion reduced DNA-end affinity, increased dissociation, and exchange of purified Ku at low concentrations, and increased multiple-loading at high concentrations, consistent with increased lateral movement. In DNA-PKcs-/- murine fibroblasts, deletion or lysine mutation (K593/4A, corresponding to K595/6A in human Ku70) in the SAP domain decreased the relative intensity of laser-induced Ku spots, revealing a role of the SAP domain in constraining Ku lateral movement on dsDNA in the absence of DNA-PKcs (or in the short-range complex).

Indexed as

DNADNA-Activated Protein KinaseDNA End-Joining RepairKu AutoantigenAnimalsDNA-Binding ProteinsDNA Breaks, Double-StrandedHumansMiceMice, KnockoutModels, MolecularProtein DomainsDNADNA-Activated Protein KinaseDNA-Binding ProteinsKu AutoantigenPrkdc protein, mouseXrcc6 protein, mouse

Identifiers

PMID42423307
PMCPMC13347266

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.