Evidence map›Paper›PMID 42418328›Full record

ArticleSTAR protocols2026

Precision ventral extraction of implanted mouse brains: A protocol.

Lyla El-Fayomi, Michael Bergamini, Derek van der Kooy

Abstract read
In one paragraph

Article in STAR protocols, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Lyla El-FayomiKrembil Research Institute, Toronto Western Hospital, Toronto, ON M5T 0S8, Canada. Electronic address: lyla.el.fayomi@mail.utoronto.ca.
Michael BergaminiDenver Health Medical Center, Denver, CO 80204, USA.
Derek van der KooyDepartment of Molecular Genetics, University of Toronto, Toronto, ON M5S 3E1, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neural implants are critical for modern mouse studies; however, permanent fixation of fibre optics or electrodes can render brain removal for histology particularly challenging. Frequent complaints include implant damage and tissue distortion. Here, we outline steps for transcardial perfusion and cranial isolation, then describe a precise dissection that facilitates brain extraction from the skull's ventral aspect. We further detail post-fixation and cryoprotection steps. Our approach is anchored in clear anatomical landmarks to ensure minimal tissue trauma, clean separation, and reproducibility. For complete details on the use and execution of this protocol, please refer to El-Fayomi et al.

Indexed as

Biotechnology and bioengineeringHealth SciencesModel OrganismsNeuroscience

Identifiers

PMID42418328
PMCPMC13356627

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.