Evidence map›Paper›PMID 42414883›Full record

ArticleBMC microbiology2026

Molecular characterization of Treponema pallidum-related rabbit-derived material following experimental inoculation with human chancre-derived clinical specimens: a pilot exploratory study.

Nazym Syrym, Akbope Abdykalyk, Sabit Kokanov, Bolat Yespembetov, Aziz Nakhanov, Aibol Terebay, Alinur Toleukhan, Sabira Alpysbayeva, Aktoty Anarbekova, Makhpal Sarmykova and 5 more

Abstract read
In one paragraph

Article in BMC microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Nazym SyrymResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Akbope AbdykalykResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Sabit KokanovResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Bolat YespembetovResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Aziz NakhanovResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Aibol TerebayResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Alinur ToleukhanResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Sabira AlpysbayevaResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Aktoty AnarbekovaResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Makhpal SarmykovaResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Yeldos SerikbayResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Bekzat YerzhigitResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Kali TileukhanovResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Aigerim ZhakypbekResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan.
Azamat AbdimukhtarResearch Institute for Biological Safety Problems, National Holding QazBioPharm, Gvardeisky, 080409, Kazakhstan. a.abdimukhtar@biosafety.kz.

Funding

Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan AP23489672
6 · The paper itself

Abstract

backgroundSyphilis remains a major sexually transmitted infection worldwide. Treponema pallidum subspecies pallidum is difficult to investigate under conventional laboratory cultivation conditions, which limits experimental and molecular studies involving clinical material. This pilot exploratory study aimed to obtain preliminary molecular evidence of Treponema pallidum-related rabbit-derived material following inoculation with human chancre-derived clinical specimens. Chancre-derived clinical material was examined by dark-field microscopy and used for experimental intratesticular inoculation in rabbits, followed by real-time polymerase chain reaction (PCR), conventional PCR targeting partial 16 S ribosomal RNA gene fragments, Sanger sequencing, and phylogenetic analysis.

resultsThin spiral-shaped structures morphologically consistent with treponemal organisms were observed in selected clinical specimens by dark-field microscopy. Real-time PCR demonstrated amplification signals consistent with Treponema pallidum-related DNA in three rabbit-derived samples following initial inoculation. Because inflammatory findings remained limited, these PCR-positive rabbits subsequently received secondary intratesticular inoculation using cryopreserved chancre-derived material as an exploratory modification intended to improve recovery of rabbit-derived material for downstream molecular analysis. Following secondary inoculation, these PCR-positive rabbits developed unilateral orchitis-like inflammatory changes involving the secondarily inoculated (contralateral) testis. Conventional PCR generated partial 16 S rRNA gene amplicons of the expected size (~ 1.5 kb) in PCR-positive samples. Sequencing analysis demonstrated high similarity to published Treponema pallidum reference sequences, with sequence identity ranging from approximately 99.45% to 100%. Phylogenetic analysis demonstrated clustering of the obtained sequences with published Treponema pallidum reference sequences retrieved from GenBank.

conclusionsThe combined use of dark-field microscopy, experimental rabbit inoculation, species-specific real-time PCR, sequencing, and phylogenetic analysis enabled preliminary molecular detection and partial sequence-based characterization of rabbit-derived Treponema pallidum-related material obtained following inoculation with chancre-derived clinical specimens. Although exploratory and limited by the small number of positive samples and partial 16 S ribosomal RNA gene analysis, the findings provide preliminary molecular evidence supporting the potential usefulness of rabbit-based experimental approaches for downstream molecular investigations.

Indexed as

SyphilisTreponema pallidumAnimalsDNA, BacterialDNA, RibosomalHumansMaleMicroscopyPhylogenyPilot ProjectsRabbitsRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialDNA, RibosomalRNA, Ribosomal, 16S16S rRNADark-field microscopyExperimental infectionMolecular characterizationPhylogenetic analysisRabbit inoculation modelReal-time PCRSanger sequencingSyphilisTreponema pallidum

Identifiers

PMID42414883
PMCPMC13625420

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.