Evidence map›Paper›PMID 42414289›Full record

ArticleNature communications2026

Discovery of potent low-toxicity antimicrobial peptides through diffusion modeling.

Konstantinos Markakis, Shanghyeon Kim, Cheng-En Tan, Ilias Tagkopoulos

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Konstantinos Markakis *Department of Computer Science, University of California, Davis, Davis, CA, USA.ORCID http://orcid.org/0000-0003-0018-5466
Shanghyeon Kim *Genome Center, University of California, Davis, CA, USA.
Cheng-En TanDepartment of Computer Science, University of California, Davis, Davis, CA, USA.ORCID http://orcid.org/0009-0009-9977-8341
Ilias TagkopoulosDepartment of Computer Science, University of California, Davis, Davis, CA, USA. itagkopoulos@ucdavis.edu.ORCID http://orcid.org/0000-0003-1104-7616

Funding

United States Department of Agriculture | National Institute of Food and Agriculture (NIFA) 2020-67021-32855
6 · The paper itself

Abstract

The rapid emergence of multidrug-resistant bacteria has created an urgent need for improved antimicrobial discovery and screening platforms. Here, we present ARCADIAMP, a generative and virtual screening platform that couples an iterative-learning discrete denoising diffusion probabilistic model with a two-stage Evolutionary Scale Modeling 2 (ESM2)-based antibacterial activity classifier to generate, classify, and prioritize potent AMPs with high activity, low toxicity, and favorable serum stability. Eight of the ten experimentally screened peptide candidates showed antimicrobial activity (MIC ≤ 32 μg/mL), while one generated candidate, Arcinin, demonstrated strong activity against ESKAPE pathogens (MIC 8-32 μg/mL), low hemolytic activity (LC

Indexed as

Anti-Bacterial AgentsAntimicrobial Cationic PeptidesAntimicrobial PeptidesDrug DiscoveryAnimalsErythrocytesHemolysisHumansMiceMicrobial Sensitivity TestsMolecular Dynamics SimulationAnti-Bacterial AgentsAntimicrobial Cationic PeptidesAntimicrobial Peptides

Identifiers

PMID42414289
PMCPMC13473622

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.