ArticleGigaScience2026
A comprehensive reference genome assembly dataset of birds inhabiting Denmark, Greenland, and the Faroe Islands.
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Article in GigaScience, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
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93 authors.
Daniel Bilyeli ØksnebjergSection for Hologenomics, Globe Institute, University of Copenhagen, Øster Farimagsgade 5, Copenhagen 1353, Denmark.
Sascha Dreyer NielsenSection for Hologenomics, Globe Institute, University of Copenhagen, Øster Farimagsgade 5, Copenhagen 1353, Denmark.
Guangji ChenCenter for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, 866 Yuhangtang Rd, Xihu District, Hangzhou 310058, China.
Michael J AndersenDepartment of Biology and Museum of Southwestern Biology, University of New Mexico, 302 Washington St SE, Albuquerque, NM 87106, USA.
Vanessa AlmagroParc Zoològic de Barcelona, Parc de la Ciutadella, Barcelona 08003, Spain.
Roberto AmbrosiniDepartment of Environmental Science and Policy, University of Milan, Via Giovanni Celoria 26, Milan 20133, Italy.
Shigeki AsaiYamashina Institute for Ornithology,115 Konoyama, Abiko, Chiba 270-1145, Japan.
Sharon M BirksBurke Museum, University of Washington, 4300 15th Ave NE, Seattle WA 98105, USA.
Robb T BrumfieldLouisiana State University Museum of Natural Science, 119 Foster Hall, Baton Rouge LA 70803, USA.
Vojtěch BrlíkDepartment of Ecology, Charles University, Viničná 7, Prague 128 44, Czech Republic.
Annaïs CarbajalDepartment of Animal Health and Anatomy, Veterinary Faculty, Universitat Autònoma de Barcelona, Campus de la UAB, Barcelona 08193, Spain.
Theresa M BurgUniversity of Lethbridge, 4401 University Drive W, Lethbridge AB T1K 3M4, Canada.
Sandra BouwhuisInstitute of Avian Research "Vogelwarte Helgoland," An der Vogelwarte 21, Wilhelmshaven 26386, Germany.
Shuang WangCenter for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, 866 Yuhangtang Rd, Xihu District, Hangzhou 310058, China.
Wanjun ChenBGI Research, Building 11, Beidou Industrial Park, East Lake High-Tech Development Zone, Wuhan, Hubei 430074, China.
Santiago ClaramuntDepartment of Biological Sciences, Louisiana State University New Orleans, 2000 Lakeshore Dr, New Orleans LA 70148, USA.
Fuqiang LinCenter for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, 866 Yuhangtang Rd, Xihu District, Hangzhou 310058, China.
Jiaqi XuCenter for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, 866 Yuhangtang Rd, Xihu District, Hangzhou 310058, China.
Wei DaiBGI Research, Building 11, Beidou Industrial Park, East Lake High-Tech Development Zone, Wuhan, Hubei 430074, China.
Scott V EdwardsDepartment of Organismic and Evolutionary Biology, Harvard University, 26 Oxford St, Cambridge MA 02138, USA.
Mary Margaret FerraroCornell University Museum of Vertebrates, Cornell University, 159 Sapsucker Woods Rd, Ithaca NY 14850, USA.
Joerns FickelLeibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke-Straße 17, Berlin 10315, Germany.
Jon FjeldsåNatural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, Copenhagen K 1350, Denmark.
Giulio FormentiThe Vertebrate Genome Laboratory, The Rockefeller University, 1230 York Ave, New York NY 10065, USA.
Jérôme FuchsInstitut de Systématique Evolution Biodiversité, Muséum national d'Histoire Naturelle, CNRS, SU, EPHE-PSL, UA, 57 Rue Cuvier, Paris 75005, France.
Guido Roberto GalloBiodiversity Genomics Research Centre, University of Milan, Via Giovanni Celoria 26, Milan 20133, Italy.
Luca GianfranceschiBiodiversity Genomics Research Centre, University of Milan, Via Giovanni Celoria 26, Milan 20133, Italy.
Gary R GravesDepartment of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, 10th St. & Constitution Ave. NW, Washington, DC 20560, USA.
Grzegorz GrzywaczewskiDepartment of Zoology and Animal Ecology, University of Life Sciences Lublin, Akademicka 13, 20-950, Lublin, Poland.
Wei HanCenter for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, 866 Yuhangtang Rd, Xihu District, Hangzhou 310058, China.
Tri HaryokoMuseum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency (BRIN) Jl. Raya Jakarta-Bogor Km. 46, Cibinong, Bogor, West Java 16911, Indonesia.
Ando HarukoNational Institute for Environmental Studies (NIES),16-2 Onogawa, Tsukuba 305-8506, Japan.
Olof HellgrenEvolutionary Ecology and Infection Biology, Department of Biology, Lund University, Sölvegatan 37, Lund 223 62, Sweden.
Juan Carlos IlleraBiodiversity Research Institute (CSIC-Oviedo University-Principality of Asturias), University of Oviedo, Campus of Mieres, Edificio de Investigación, c/ Gonzalo Gutiérrez Quirós s/n, Mieres, Asturias 33600, Spain.
Erich D JarvisThe Vertebrate Genome Laboratory, The Rockefeller University, 1230 York Ave, New York NY 10065, USA.
Lars E JohannessenNatural History Museum, University of Oslo, Sars' gate 1, Oslo 0562, Norway.
Arild JohnsenNatural History Museum, University of Oslo, Sars' gate 1, Oslo 0562, Norway.
Ulf S JohanssonSwedish Museum of Natural History, Frescativägen 40, Stockholm 114 18, Sweden.
Knud Andreas JønssonNatural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, Copenhagen K 1350, Denmark.
Wei JiangBGI Research, Building 11, Beidou Industrial Park, East Lake High-Tech Development Zone, Wuhan, Hubei 430074, China.
Victoria JayneSchool of Life Sciences, The Chinese University of Hong Kong, Science Centre, CUHK, Shatin, New Territories, Hong Kong SAR, China.
Takaharu KawashimaNational Institute for Environmental Studies (NIES),16-2 Onogawa, Tsukuba 305-8506, Japan.
Adam D LeachéBurke Museum, University of Washington, 4300 15th Ave NE, Seattle WA 98105, USA.
Fumin LeiInstitute of Zoology, Chinese Academy of Sciences, 1 Beichen West Road, Beijing 100101, China.
Jan T LifjeldNatural History Museum, University of Oslo, Sars' gate 1, Oslo 0562, Norway.
Miriam LiedvogelInstitute of Avian Research "Vogelwarte Helgoland," An der Vogelwarte 21, Wilhelmshaven 26386, Germany.
Yang LiuState Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen University, No. 66, Gongchang Road, Shenzhen 518107, China.
Irby J LovetteCornell University Museum of Vertebrates, Cornell University, 159 Sapsucker Woods Rd, Ithaca NY 14850, USA.
Sarah S T MakSection for Hologenomics, Globe Institute, University of Copenhagen, Øster Farimagsgade 5, Copenhagen 1353, Denmark.
Isao NishiumiDepartment of Zoology, National Museum of Nature and Science, 7-20 Uenokoen, Tokyo 110-8718, Japan.
Michelle F O'BrienWildfowl and Wetlands Trust Slimbridge, Slimbridge, Gloucestershire GL2 7BT, UK.
Manabu OnumaNational Institute for Environmental Studies (NIES),16-2 Onogawa, Tsukuba 305-8506, Japan.
Bent PetersenSection for Hologenomics, Globe Institute, University of Copenhagen, Øster Farimagsgade 5, Copenhagen 1353, Denmark.
Martin PäckertSenckenberg Natural History Collections Dresden, Königsbrücker Landstraße 159, Dresden 01109, Germany.
Marco PaviaMuseo di Geologia e Paleontologia, Dipartimento di Scienze della Terra, University of Torino, Via Valperga Caluso 35, Torino 10125, Italy.
Alivia PriceDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Javier QuesadaDepartment of Vertebrates, Natural Science Museum of Barcelona, Barcelona, Spain.
Carsten RahbekCenter for Macroecology, Evolution and Climate, Globe Institute, University of Copenhagen, Universitetsparken 15, Copenhagen 2100, Denmark.
Andrew Hart ReeveNatural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, Copenhagen K 1350, Denmark.
Alejandro Rico-GuevaraBurke Museum, University of Washington, 4300 15th Ave NE, Seattle WA 98105, USA.
Markus RischBündnis Naturschutz in Dithmarschen e.V., Meldorfer Straße 17, Hemmingstedt 25770, Germany.
Vanya G RohwerCornell University Museum of Vertebrates, Cornell University, 159 Sapsucker Woods Rd, Ithaca NY 14850, USA.
Takema SaitohYamashina Institute for Ornithology,115 Konoyama, Abiko, Chiba 270-1145, Japan.
C Jonathan SchmittDepartment of Organismic and Evolutionary Biology, Harvard University, 26 Oxford St, Cambridge MA 02138, USA.
Anna SchnelleInstitute of Avian Research "Vogelwarte Helgoland," An der Vogelwarte 21, Wilhelmshaven 26386, Germany.
Manuel SchweizerNatural History Museum Bern, Bernastrasse 15, Bern 3005, Switzerland.
Simona SecomandiDepartment of Biosciences, University of Milan, Via Giovanni Celoria 26, Milan 20133, Italy.
Paula Serres-CorralDepartment of Animal Health and Anatomy, Veterinary Faculty, Universitat Autònoma de Barcelona, Campus de la UAB, Barcelona 08193, Spain.
Sara ShoplandWildfowl and Wetlands Trust Slimbridge, Slimbridge, Gloucestershire GL2 7BT, UK.
Gang SongInstitute of Zoology, Chinese Academy of Sciences, 1 Beichen West Road, Beijing 100101, China.
Tamás SzékelyDepartment of Life Sciences, Milner Centre for Evolution, University of Bath, Claverton Down, Bath BA2 7AY, UK.
Ivan J StarikovZoological Institute of Russian Academy of Sciences, Universitetskaya Emb., 1, St., St. Petersburg 199034, Russia.
Josefin StillerDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Xulan ShenCenter for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, 866 Yuhangtang Rd, Xihu District, Hangzhou 310058, China.
Zhongyi SunCenter for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, 866 Yuhangtang Rd, Xihu District, Hangzhou 310058, China.
Dieter Thomas TietzeCenter of Natural History, Universität Hamburg, Martin-Luther-King-Platz 3, Hamburg 20146, Germany.
Pavel S TomkovichZoological Museum of Lomonosov Moscow State University, Bol'shaya Nikitskaya Ulitsa, 2, Moscow 125009, Russia.
Alfréd TrnkaDepartment of Biology, University of Trnava, Priemyselná 4, Trnava 918 43, Slovakia.
Araxi O UrrutiaInstituto de Ecología, Universidad Nacional Autónoma de México, Circuito Exterior S/N, Ciudad Universitaria, Coyoacán, CDMX 04510, México.
Sölvi Rúnar VignissonSudurnes Science and Learning Center, Sandgerði, Iceland.
Kees WandersNatural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, Copenhagen K 1350, Denmark.
Michael WinkInstitute of Pharmacy and Molecular Biotechnology, Heidelberg University, Im Neuenheimer Feld 364, Heidelberg 69120, Germany.
Kevin WinkerUniversity of Alaska Museum, 1962 Yukon Dr, Fairbanks AK 99775, USA.
Christopher C WittDepartment of Biology and Museum of Southwestern Biology, University of New Mexico, 302 Washington St SE, Albuquerque, NM 87106, USA.
Jack J WithrowUniversity of Alaska Museum, 1962 Yukon Dr, Fairbanks AK 99775, USA.
Jessie L WilliamsonCornell University Museum of Vertebrates, Cornell University, 159 Sapsucker Woods Rd, Ithaca NY 14850, USA.
Glenn YannicUniversité Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, 2233 Rue de la Piscine, Gières 38610, France.
Nobuyuki YamaguchiInstitute of Tropical Biodiversity and Sustainable Development, University Malaysia Terengganu, Malaysia.
Zhengwang ZhangCollege of Life Sciences, Beijing Normal University, 19 Xinjiekou Outer St, Beijing 100875, China.
M Thomas P GilbertSection for Hologenomics, Globe Institute, University of Copenhagen, Øster Farimagsgade 5, Copenhagen 1353, Denmark.
Guojie ZhangCenter for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, 866 Yuhangtang Rd, Xihu District, Hangzhou 310058, China.
Shaohong FengCenter for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, 866 Yuhangtang Rd, Xihu District, Hangzhou 310058, China.
Peter A HosnerNatural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, Copenhagen K 1350, Denmark.ORCID 0000-0001-7499-6224
Funding
Danish National Research Foundation DNRF143European Regional Development Fund PID2022-140091NB-I00Independent Research Fund Denmark 1054-00039BMinistry of Science and Higher Education of Russia FMFG-2025-0012National Key Research and Development Program of China 2023YFA1800500National Natural Science Foundation of China 32170626Villum Foundation 25900Villum Foundation 25925
Abstract
Reference genome assemblies are essential infrastructure for investigating phylogeny and population/conservation genetics of wild organisms. Birds serve as model vertebrates in ecology and evolutionary biology due to their well-documented natural histories and extensive community science data. We release a set of 350 newly assembled avian genomes, which, when combined with 97 previously published genomes, represent 447 of the bird species recorded in Denmark, the Faroe Islands, and Greenland-the largest regional dataset of a vertebrate group to date. These genomes are published for various research activities. This data release advances the global effort to build comprehensive and accessible biodiversity genomic resources for the research community.
Indexed as
BirdsGenomeGenomicsAnimalsBiodiversityDenmarkGreenlandIslandsPhylogenyArctic biodiversityavian genomicscomparative genomicsconservation geneticsecological genomicsevolutionary biologywildlife conservation
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