Evidence map›Paper›PMID 42410257›Full record

ArticleThe EMBO journal2026

The TPR2 corepressor forms condensates with repressors to fine-tune growth and development in rice.

Yu Zhang, Bingchen Li, Yu Chen, Jiawei Li, Yao Wang, Tiantian Ye, Ying Ye, Zhiwei Liu, Zhiyue Feng, Stephanie Hutin and 9 more

Abstract read
In one paragraph

Article in The EMBO journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Yu ZhangNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.ORCID http://orcid.org/0000-0002-5804-8918
Bingchen LiNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Yu ChenNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Jiawei LiNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Yao WangNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Tiantian YeNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Ying YeNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Zhiwei LiuNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Zhiyue FengNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Stephanie HutinLaboratoire de Physiologie Cellulaire et Végétale, Université Grenoble-Alpes, CNRS, CEA, INRAE, IRIG-DBSCI, 17 rue des Martyrs, 38000, Grenoble, France.ORCID http://orcid.org/0000-0002-2168-5841
Shaoli ZhouNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Jianping GuoNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Ruihui ZhangNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Zhu LiuNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Faming DongNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Haiyan XiongNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.
Chloe ZubietaLaboratoire de Physiologie Cellulaire et Végétale, Université Grenoble-Alpes, CNRS, CEA, INRAE, IRIG-DBSCI, 17 rue des Martyrs, 38000, Grenoble, France.ORCID http://orcid.org/0000-0003-4558-9333
Lizhong XiongNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China. lizhongx@mail.hzau.edu.cn.ORCID http://orcid.org/0000-0003-0490-1474
Xuelei LaiNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China. xuelei_lai@mail.hzau.edu.cn.ORCID http://orcid.org/0000-0003-4989-2444

Funding

CSU | Fundamental Research Funds for Central Universities of the Central South University (Fundamental Research Funds for the Central Universities of Central South University) 2662025SKPY007Ministry of Science and Technology of China Cai Yuanpei-ProjectMOA | Earmarked Fund for China Agriculture Research System CARS-01MOST | National Natural Science Foundation of China (NSFC) 32270303MOST | National Natural Science Foundation of China (NSFC) 32472051| Natural Science Foundation of Hubei Province () 2023AFA095
6 · The paper itself

Abstract

Transcriptional repression is a central mechanism regulating plant growth and development, yet how plant-specific corepressors achieve robust gene silencing remains unclear. Here, we identify the rice corepressor TPR2 (TOPLESS-RELATED 2) as a phase-separating protein that forms nuclear condensates through the cooperative action of an intrinsically disordered region (IDR1) and a plant-specific N-terminal tetramerization domain. Structure-guided mutagenesis disrupting tetramerization or deleting IDR1 markedly impaired condensate formation in vivo and in vitro. Complementation assays showed that only full-length TPR2, capable of robust condensate formation, rescued the growth defects of the tpr2 mutant, whereas phase separation-deficient variants failed to do so. Mechanistically, we demonstrate that TPR2 co-condenses with repressors such as D53 and IAA3 to facilitate histone deacetylation and establish repressive chromatin states in a phase separation-dependent manner, thereby fine-tuning key developmental genes. Together, these findings define a condensate-based mechanism for transcriptional repression in plants, linking corepressor phase separation to chromatin modification, gene silencing and developmental control.

Indexed as

Co-Repressor ProteinsGene Expression Regulation, PlantOryzaPlant ProteinsChromatinPhase SeparationChromatinCo-Repressor ProteinsPlant Proteins

Identifiers

PMID42410257
PMCPMC13434662

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.