Evidence map›Paper›PMID 42409794›Full record

ArticleNature communications2026

FLOWR.ROOT - A flow matching-based foundation model for joint multi-purpose structure-aware 3D ligand generation and affinity prediction.

Julian Cremer, Tuan Le, Mohammad M Ghahremanpour, Emilia Sługocka, Filipe Menezes, Djork-Arné Clevert

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Julian CremerMachine Learning & Computational Sciences, Pfizer Worldwide R&D, Berlin, Germany. jn.cremer@icloud.com.ORCID 0000-0001-6319-7283
Tuan LeMachine Learning & Computational Sciences, Pfizer Worldwide R&D, Berlin, Germany.
Mohammad M GhahremanpourComputational Chemistry, Medicine Design, Pfizer Worldwide R&D, Cambridge, MA, USA.
Emilia SługockaDoctoral School of Medical and Health Sciences, Jagiellonian University Medical College, Cracow, Poland.ORCID 0000-0001-5355-577X
Filipe MenezesInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Neuherberg, Germany. filipe.menezes@helmholtz-munich.de.ORCID 0000-0002-7630-5447
Djork-Arné ClevertMachine Learning & Computational Sciences, Pfizer Worldwide R&D, Berlin, Germany.ORCID 0000-0003-4191-2156

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present FLOWR.ROOT, an SE(3)-equivariant flow-matching foundation model that unifies pocket-aware 3D ligand generation with multi-endpoint binding affinity prediction (pIC

Indexed as

SoftwareAmyloid Precursor Protein SecretasesAspartic Acid EndopeptidasesHumansLigandsModels, MolecularPharmacophoreProtein BindingAmyloid Precursor Protein SecretasesAspartic Acid EndopeptidasesBACE1 protein, humanLigands

Identifiers

PMID42409794
PMCPMC13338463

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.