Evidence map›Paper›PMID 42399228›Full record

ArticleNature communications2026

Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared immune landscape and targetable surface markers.

Gaël Moquin-Beaudry, Maria Eugénia Marques Da Costa, Pierre Khneisser, Corentin Thuilliez, Baptiste Audinot, Hanane Zair, Nicolas Signolle, Michael McDermott, Marie-Dominique Tabone, Jean-Yves Scoazec and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Gaël Moquin-BeaudryBiiOSTeam, INSERM U1360 Biology for therapeutics in resistant pediatric cancers, Gustave Roussy, Université Paris-Saclay, Villejuif, France.ORCID http://orcid.org/0000-0003-3286-3188
Maria Eugénia Marques Da CostaBiiOSTeam, INSERM U1360 Biology for therapeutics in resistant pediatric cancers, Gustave Roussy, Université Paris-Saclay, Villejuif, France.ORCID http://orcid.org/0000-0002-1498-603X
Pierre KhneisserBiiOSTeam, INSERM U1360 Biology for therapeutics in resistant pediatric cancers, Gustave Roussy, Université Paris-Saclay, Villejuif, France.
Corentin ThuilliezBiiOSTeam, INSERM U1360 Biology for therapeutics in resistant pediatric cancers, Gustave Roussy, Université Paris-Saclay, Villejuif, France.ORCID http://orcid.org/0009-0009-7590-7583
Baptiste AudinotBiiOSTeam, INSERM U1360 Biology for therapeutics in resistant pediatric cancers, Gustave Roussy, Université Paris-Saclay, Villejuif, France.
Hanane ZairBiiOSTeam, INSERM U1360 Biology for therapeutics in resistant pediatric cancers, Gustave Roussy, Université Paris-Saclay, Villejuif, France.
Nicolas SignolleDepartment of Pathology and Laboratory Medicine, Translational Research Laboratory and Biobank, AMMICA, INSERM US23/CNRS UMS3655, Gustave Roussy, Villejuif, France.
Michael McDermottHistology Laboratory, Pathology Department, Our Lady's Children's Hospital, Crumlin, Dublin, Ireland.
Marie-Dominique TaboneDepartment of Pediatric Hematology and Oncology, Armand Trousseau Hospital, AP-HP, Sorbonne University, Paris, France.ORCID http://orcid.org/0000-0002-9486-8454
Jean-Yves ScoazecDepartment of Medical Biology and Pathology, Gustave Roussy, Villejuif, France.ORCID http://orcid.org/0000-0003-1604-6823
Cécile BadoualDepartment of Medical Biology and Pathology, Gustave Roussy, Villejuif, France.
Birgit GeoergerBiiOSTeam, INSERM U1360 Biology for therapeutics in resistant pediatric cancers, Gustave Roussy, Université Paris-Saclay, Villejuif, France.ORCID http://orcid.org/0000-0003-4361-3643
Damien DrubayDepartment of Biostatistics, Gustave Roussy, Villejuif, France.ORCID http://orcid.org/0000-0002-9997-9727
Nathalie GasparBiiOSTeam, INSERM U1360 Biology for therapeutics in resistant pediatric cancers, Gustave Roussy, Université Paris-Saclay, Villejuif, France.ORCID http://orcid.org/0000-0002-1827-8903
Antonin MarchaisBiiOSTeam, INSERM U1360 Biology for therapeutics in resistant pediatric cancers, Gustave Roussy, Université Paris-Saclay, Villejuif, France. antonin.marchais@gustaveroussy.fr.ORCID http://orcid.org/0000-0003-0954-8294

Funding

Institut National de la Santé et de la Recherche Médicale (National Institute of Health and Medical Research) 22CM046-00Institut National Du Cancer (French National Cancer Institute) ParPedia-19-001Institut National Du Cancer (French National Cancer Institute) PEDIAHR21-020
6 · The paper itself

Abstract

Osteosarcoma is characterized by extensive inter- and intra-tumoral heterogeneity, contributing to treatment resistance and poor outcomes. Here, we present a comprehensive spatial transcriptomics analysis of osteosarcoma, encompassing primary tumors and local or metastatic relapses across diverse phenotypic subtypes. Despite this heterogeneity, we identify a nine-gene cell surface signature with theranostic potential, validated in independent datasets and shown by immunohistochemistry to be distributed across distinct tumor compartments, supporting multi-targeted therapeutic strategies. Analysis of the tumor immune microenvironment reveals systematic lymphoid exclusion, differential myeloid infiltration patterns, and a type I interferon response signature that may explain the failure of IFN-α supplementation in prior trials. Notably, we provide evidence of monocyte-derived osteoclastic differentiation within human osteosarcoma lung metastases, identifying precursor populations with complex secretory phenotypes representing potential immunomodulatory targets. This study offers biological insights and translational opportunities while providing a resource for the osteosarcoma research community.

Indexed as

Biomarkers, TumorBone NeoplasmsOsteosarcomaTranscriptomeGene Expression ProfilingGene Expression Regulation, NeoplasticHumansLung NeoplasmsOsteoclastsSpatial TranscriptomicsTumor MicroenvironmentBiomarkers, Tumor

Identifiers

PMID42399228
PMCPMC13470005

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.