Evidence map›Paper›PMID 42397120›Full record

ArticleeLife2026

TopoMetry systematically learns and evaluates the latent geometry of single-cell data.

David Sidarta-Oliveira, Ana I Domingos, Licio A Velloso

Abstract read
In one paragraph

Article in eLife, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

David Sidarta-OliveiraUniversity of Oxford, Oxford, United Kingdom.
Ana I DomingosUniversity of Oxford, Oxford, United Kingdom.ORCID 0000-0002-7938-4814
Licio A VellosoUniversity of Campinas, Campinas, Brazil.ORCID 0000-0002-4806-7218

Funding

Biotechnology and Biological Sciences Research Council BB/Y006488/1European Research Council ERC-2017 COG 771431Fundação de Amparo à Pesquisa do Estado de São Paulo #2013/07607-8Fundação de Amparo à Pesquisa do Estado de São Paulo #2020/04074-2NIH HHS #5UM1DK10555410Pfizer UK #70591281
6 · The paper itself

Abstract

Reconstructing and investigating the geometry underlying data is a fundamental task in single-cell analysis, yet no unified framework exists for learning, evaluating, and diagnosing representations that faithfully preserve it. We present TopoMetry, a geometry-aware framework that learns intrinsic coordinate systems directly from the data and refines them into high-fidelity

Indexed as

Computational BiologySingle-Cell AnalysisAnimalsHumansbioinformaticscomputational biologydimensional reductionhumanmousepattern discoverysystems biologyviruses

Identifiers

PMID42397120
PMCPMC13331481

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.