Evidence map›Paper›PMID 42395449›Full record

ArticlebioRxiv : the preprint server for biology2026

Spatial Orchestration of Skin Fibrosis by a CD8+ T cell- Myofibroblast Axis.

Ian C Boothby, Thomas C Gan, Vrinda Johri, Emily Flynn, Maha Kazmi, Lenka Maliskova, Saba Shaikh, Shivaram Yellamilli, Gabriela K Fragiadakis, Isaac Neuhaus and 6 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ian C BoothbyDepartment of Dermatology, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0002-1112-2834
Thomas C GanDepartment of Dermatology, University of California, San Francisco; San Francisco, CA, USA.
Vrinda JohriUCSF CoLabs, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0001-7341-4675
Emily FlynnUCSF CoLabs, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0001-9703-3594
Maha KazmiDepartment of Dermatology, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0002-2931-1369
Lenka MaliskovaUCSF CoLabs, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0001-7677-3833
Saba ShaikhUCSF CoLabs, University of California, San Francisco; San Francisco, CA, USA.ORCID 0009-0000-9272-3713
Shivaram YellamilliUCSF CoLabs, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0001-9209-4830
Gabriela K FragiadakisUCSF CoLabs, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0001-9703-2591
Isaac NeuhausDepartment of Dermatology, University of California, San Francisco; San Francisco, CA, USA.
Walter EckalbarUCSF CoLabs, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0003-2520-7852
Jarish N CohenDepartment of Dermatology, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0002-6043-2177
Alexis J CombesUCSF CoLabs, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0002-9110-6542
Anna HaemelDepartment of Dermatology, University of California, San Francisco; San Francisco, CA, USA.ORCID 0009-0000-0400-9158
Michael D RosenblumDepartment of Dermatology, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0002-0462-5732
Maxime J KinetDivision of Rheumatology, Department of Medicine, University of California, San Francisco; San Francisco, CA, USA.ORCID 0000-0002-9026-8777

Funding

Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2003 to 2019
$21.8M
RESOURCE-BASED CENTER FOR THE ADVANCEMENT OF PRECISION MEDICINE IN RHEUMATOLOGYP30AR070155 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Mary C Nakamura · 2016 to 2026
$8.2M
Elucidating the Role of Regulatory T cells in Establishing and Maintaining a Th2 Niche in SkinR01AR077553 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ROSENBLUM, MICHAEL DAVID · 2020 to 2024
$3.5M
Academic Rheumatology and Clinical ImmunologyT32AR079068 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jinoos Yazdany, JULIE ZIKHERMAN · 2021 to 2026
$2.5M
Epigenomic mechanisms of cardiac fibrosis and heart failureR01HL175312 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI Michael Alexanian · 2025 to 2026
$1.6M
Chromatin Regulation of Immune Cells in Myocardial InflammationR01HL181372 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI Michael Alexanian · 2025 to 2026
$1.6M
Illumina NovaSeq 6000 Sequencing SystemS10OD028511 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHOW, ERIC D · 2020 to 2020
$583k
BD FACSAria Fusion Cell SorterS10OD021822 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LEE, MICHAEL R. · 2016 to 2016
$573k
Defining the role of Pi16-expressing fibroblasts in mouse and human fibrosing skin diseaseK08AR085193 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Maxime Jeremie Kinet · 2025 to 2026
$351k
NHLBI NIH HHS R01 HL175312NHLBI NIH HHS R01 HL181372NIAMS NIH HHS K08 AR085193NIAMS NIH HHS P30 AR070155NIAMS NIH HHS R01 AR077553NIAMS NIH HHS T32 AR079068NIDDK NIH HHS P30 DK063720NIH HHS S10 OD021822NIH HHS S10 OD028511
6 · The paper itself

Abstract

Fibrosing skin diseases are highly morbid conditions with diverse clinical and histopathologic features. Prior work, primarily in systemic sclerosis (SSc), has yielded mixed data regarding the immune drivers of fibrosis, as well as the identity and spatial localization of pro-fibrotic fibroblast cell subsets. Here, we focus on morphea and eosinophilic fasciitis (EF), which cause more acutely inflammatory skin fibrosis. Using multimodal single-nucleus and spatial transcriptomics, we find that effector CD8+ T cells are highly enriched in fibrotic skin. These cells are particularly abundant in inflammatory tissue domains bordering fibrotic stroma, which are marked by expression of interferon-γ stimulated genes. Inflammatory domains feature a loss of local homeostatic fibroblast populations and replacement with ADAM12-expressing inflammatory fibroblasts and myofibroblasts, which co-localize closely with CD8+ T cells. All subtypes of morphea featured similar patterns of CD8+ T-cell-associated fibro-inflammatory zonation and fibroblast transformation, suggesting that shared mechanisms can drive fibrosis across stromal compartments of skin. We apply these findings to a large publicly available scleroderma dataset and find that similar processes occur in SSc. Mechanistically, ablation of CD8+ T cells in mice ameliorates bleomycin-driven inflammation and fibrosis, as does fibroblast-intrinsic abrogation of IFN-γ signaling. These data establish CD8+ T cell-driven fibrogenesis as a key feature of fibrosing skin diseases and raise the prospect of targeting CD8+ T cells in autoimmune fibrosis more broadly.

Identifiers

PMID42395449
PMCPMC13320764

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.