Evidence map›Paper›PMID 42395443›Full record

ArticlebioRxiv : the preprint server for biology2026

Deep dynamical models of single-cell multiomic velocities predict loss-of-function and rescue perturbations in B cells.

Alireza Karbalayghareh, Benedikt Pelzer, Christopher R Chin, Ari Melnick, Darko Barisic, Christina S Leslie

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alireza KarbalaygharehComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-1723-9355
Benedikt PelzerDepartment of Medicine, Weill Cornell Medicine, Cornell University, New York, NY 10065, USA.
Christopher R ChinDepartment of Medicine, Weill Cornell Medicine, Cornell University, New York, NY 10065, USA.
Ari MelnickDepartment of Medicine, Weill Cornell Medicine, Cornell University, New York, NY 10065, USA.
Darko BarisicDepartment of Medicine, Weill Cornell Medicine, Cornell University, New York, NY 10065, USA.
Christina S LeslieComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.

Funding

Deciphering the Genomics of Gene Network Regulation of T Cell and Fibroblast States in Autoimmune InflammationU01HG012103 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI Christina S Leslie, Alexander Y Rudensky · 2021 to 2026
$7.5M
HSS Research Institute Rheumatology TrainingT32AR071302 · NIAMS · HOSPITAL FOR SPECIAL SURGERY · PI ALESSANDRA B PERNIS, Jane E Salmon · 2017 to 2026
$2.3M
Role of chromatin remodeling complex BAF in immunity and lymphomaR00CA246080 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Darko Barisic · 2024 to 2026
$747k
NCI NIH HHS R00 CA246080NHGRI NIH HHS U01 HG012103NIAMS NIH HHS T32 AR071302
6 · The paper itself

Abstract

We present DynaVelo, a generative neural ordinary differential equation model that learns the joint dynamics of gene expression and transcription factor (TF) motif activities in evolving cell systems using single-cell multiome with joint gene expression and chromatin accesibility readout. DynaVelo leverages partial RNA velocity information together with single-cell TF motif accessibility data to improve the modeling of cell state dynamics and identification of TF drivers. We show that DynaVelo recovers the complex and bifurcating

Identifiers

PMID42395443
PMCPMC13320785

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.