Evidence map›Paper›PMID 42393220›Full record

ArticleNature genetics2026

Spatial transcriptomic analyses highlight distinct erythroid niches in mice and humans.

Xu Han, Kehan Ren, Pan Wang, Honghao Bi, Ermin Li, Inci Aydemir, Amy Ji, Wenjie Cai, Laya Soleimanisardoo, Ching Man Wai and 6 more

Abstract read
In one paragraph

Article in Nature genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Xu Han *Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Kehan Ren *Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-4409-7145
Pan WangDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Honghao BiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Ermin LiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Inci AydemirDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Amy JiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Wenjie CaiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-5352-8779
Laya SoleimanisardooDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Ching Man WaiDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, IL, USA.
Matthew J SchipmaDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, IL, USA.
Yijie LiuDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Jeffery GoldsteinDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Madina SukhanovaDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-1843-7038
Jing YangDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Peng JiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA. peng-ji@fsm.northwestern.edu.ORCID http://orcid.org/0000-0002-8849-3625

Funding

Targeting gasdermin D to treat myelodysplastic syndromesR01HL169507 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Peng Ji · 2023 to 2026
$2.1M
The role of Pleckstrin-2 as a functional node in myeloid proliferationR01HL150729 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JI, PENG · 2020 to 2023
$2.0M
Functional roles of DDX41 in the homeostasis of G quadruplexes in erythropoiesisR01DK138205 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Peng Ji · 2024 to 2026
$1.4M
Deciphering erythroblastic islands in mice and humans during development and stressR01DK142814 · NIDDK · NORTHWESTERN UNIVERSITY · PI Peng Ji · 2026 to 2026
$680k
The functional role of DDX41 in myelodysplastic syndromesF32HL170648 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BI, HONGHAO · 2023 to 2025
$249k
The role of Gasdermin D in the bone marrow microenvironment during clonal hematopoiesis progressionK99CA289959 · NCI · NORTHWESTERN UNIVERSITY · PI REN, KEHAN · 2025 to 2025
$123k
NCI NIH HHS K99 CA289959NHLBI NIH HHS F32 HL170648NHLBI NIH HHS R01 HL150729NHLBI NIH HHS R01 HL169507NIDDK NIH HHS R01 DK138205NIDDK NIH HHS R01 DK142814U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) K99CA289959U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) F32-HL170648U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01-HL150729U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01-HL169507U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) R01-DK138205
6 · The paper itself

Abstract

Erythroid cells require specialized microenvironments called erythroblastic islands (EBIs), niches comprising a central macrophage surrounded by developing erythroid precursors, to complete their maturation. Understanding EBI composition and function has been limited by two-dimensional in vitro models and the unclear composition of EBIs in human hematopoietic tissues. Using spatial transcriptomic mapping in mouse and human hematopoietic tissues during development and under stress conditions, we show that EBI architecture is unexpectedly species-specific. In mice, C1q-expressing macrophages serve as a hallmark of EBI central macrophages and mediate clearance of ejected erythroid nuclei. In humans, however, EBIs are characterized by macrophage-independent erythroid clusters in fetal liver and bone marrow, whose integrity depends critically on the adhesion molecule ICAM4. These human erythroid clusters are disrupted in myeloid diseases but can be restored with therapy. These findings redefine conventional models of erythroid niche biology and establish a framework for understanding niche dynamics across species.

Indexed as

ErythroblastsStem Cell NicheTranscriptomeAnimalsErythroid CellsErythropoiesisGene Expression ProfilingHumansLiverMacrophagesMiceSpatial TranscriptomicsSpecies Specificity

Identifiers

PMID42393220
PMCPMC13364664

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.