Evidence map›Paper›PMID 42390223›Full record

ArticleJournal of microbiology & biology education2026

MicroID Lab Guide: an open-source, customizable web application to guide students through unknown bacterial identification in undergraduate microbiology labs.

Michael Barnhart

Abstract read
In one paragraph

Article in Journal of microbiology & biology education, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Michael BarnhartDepartment of Biology, United States Air Force Academy, Colorado Springs, Colorado, USA.ORCID 0000-0001-8906-7620

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identifying an unknown bacterial isolate is a core exercise in many undergraduate microbiology courses, but students often struggle to organize observations, select appropriate follow-up tests, and interpret results in a logical sequence. To support this process, I developed the MicroID Lab Guide, a free, open-source progressive web application that guides students through a four-phase bacterial identification workflow. The application supports initial observations, automated routing through an identification flowchart, biochemical test selection and interpretation, and final organism identification with an automated confidence check. As students enter results, a rule-based decision engine updates the list of candidate organisms and flags inconsistencies between observed and expected results. The tool also includes a searchable reference library of 67 laboratory techniques, media, and biochemical tests to provide students with on-demand procedural and interpretive support. MicroID Lab Guide runs entirely in the browser; requires no server, user accounts, or data collection; and can be used as a static web application. Importantly, the application was designed for instructor customization: organism profiles, biochemical test definitions, flowchart logic, and export templates are stored in editable source files. This article describes the design, classroom use, customization, and AI-assisted development of MicroID Lab Guide as a flexible, zero-cost model for building course-specific digital tools in undergraduate microbiology laboratories.

Indexed as

AI-assisted developmentbacterial identificationdiagnostic reasoningeducational technologymicrobiology laboratoryopen-sourceunknown identification

Identifiers

PMID42390223
PMCPMC13520718

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.