Evidence map›Paper›PMID 42386687›Full record

ArticleBioinformatics (Oxford, England)2026

IDR searcher: a search engine solution for public image resources.

Khaled Mohamed, William Moore, Dominik Lindner, Josh Moore, Jason R Swedlow, Petr Walczysko, Frances Wong, Jean-Marie Burel

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Khaled MohamedFaculty of Life Sciences, University of Dundee, Dundee, United Kingdom.
William MooreFaculty of Life Sciences, University of Dundee, Dundee, United Kingdom.
Dominik LindnerFaculty of Life Sciences, University of Dundee, Dundee, United Kingdom.
Josh MooreGerman BioImaging, Gesellschaft für Mikroskopie und Bildanalyse e. V, Konstanz, Germany.
Jason R SwedlowFaculty of Life Sciences, University of Dundee, Dundee, United Kingdom.
Petr WalczyskoFaculty of Life Sciences, University of Dundee, Dundee, United Kingdom.
Frances WongFaculty of Life Sciences, University of Dundee, Dundee, United Kingdom.
Jean-Marie BurelFaculty of Life Sciences, University of Dundee, Dundee, United Kingdom.ORCID 0000-0002-1789-1861

Funding

European UnionEuropean Union or the European Research Council Executive AgencyEuropean Union's Horizon Europe 101130216Wellcome TrustWellcome Trust 221361/Z/20/ZWellcome Trust 313803/Z/24/Z
6 · The paper itself

Abstract

motivationIn recent years, public image resources have emerged, but finding quality data efficiently remains a challenge, therefore limiting reuse.

resultsIDR searcher is an open-source search engine designed to facilitate the exploration of datasets hosted in public bioimaging resources. The application offers a fast, efficient, cost-effective solution for discovering datasets and has the potential to address current disparities in finding quality datasets for exploratory research and can be combined with metadata visualization tools to enhance usability for the scientific community. AVAILABILITY: IDR searcher is deployed using Ansible playbooks and released under the GPL v2 license. The source code associated with this manuscript is available at https://doi.org/10.5281/zenodo.20641515.

Indexed as

Image Processing, Computer-AssistedSearch EngineSoftwareDatabases, Factual

Identifiers

PMID42386687
PMCPMC13348701

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.