Evidence map›Paper›PMID 42385700›Full record

ArticleCell reports methods2026

Large-scale discovery platform enables identification of peptides targeting drug-resistant candidiasis.

Bahar Behsaz, Abhinav Adduri, Mustafa Guler, Osama G Mohamed, Andrés Mauricio Caraballo-Rodríguez, Nirmal K Chaudhary, Benjamin Krummenacher, Cameron Miller, Sitong Liu, Daniel Zamith-Miranda and 10 more

Abstract read
In one paragraph

Article in Cell reports methods, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Bacterial-derived cyclic lipopeptides suppress dauer arrest inbioRxiv : the preprint server for biology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Bahar BehsazChemia Biosciences Inc, Pittsburgh, PA 15213, USA; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Abhinav AdduriChemia Biosciences Inc, Pittsburgh, PA 15213, USA.
Mustafa GulerChemia Biosciences Inc, Pittsburgh, PA 15213, USA; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Osama G MohamedNatural Products Discovery Core, Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA; Pharmacognosy Department, Faculty of Pharmacy, Cairo University, Kasr el Aini St, Cairo 11562, Egypt.
Andrés Mauricio Caraballo-RodríguezSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California at San Diego, San Diego, CA 92093, USA.
Nirmal K ChaudharyNatural Products Discovery Core, Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
Benjamin KrummenacherChemia Biosciences Inc, Pittsburgh, PA 15213, USA; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Cameron MillerChemia Biosciences Inc, Pittsburgh, PA 15213, USA.
Sitong LiuChemia Biosciences Inc, Pittsburgh, PA 15213, USA.
Daniel Zamith-MirandaDepartments of Medicine (Division of Infectious Diseases) and Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Sneha P CouvillionBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Pamela J SchultzNatural Products Discovery Core, Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA; Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
Kirk BrodersUnited States Department of Agriculture, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention, and Applied Microbiology Research, Peoria, IL 61604, USA.
David H ShermanDepartment of Medicinal Chemistry, College of Pharmacy, University of Michigan, Ann Arbor, MI 48109, USA; Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
Ernesto S NakayasuBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Joshua D NosanchukDepartments of Medicine (Division of Infectious Diseases) and Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Covenant Healthcare College of Medicine, Central Michigan University, Mt. Pleasant, MI USA 48859.
Pieter C DorresteinSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California at San Diego, San Diego, CA 92093, USA; Department of Pharmacology and Pediatrics, University of California at San Diego, San Diego, CA 92093, USA.
Jason ClementBaruch S. Blumberg Institute, 3805 Old Easton Road, Doylestown, PA 18902, USA. Electronic address: jason.clement@bblumberg.org.
Ashootosh TripathiNatural Products Discovery Core, Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA; Department of Medicinal Chemistry, College of Pharmacy, University of Michigan, Ann Arbor, MI 48109, USA; Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA. Electronic address: ashtri@umich.edu.
Hosein MohimaniChemia Biosciences Inc, Pittsburgh, PA 15213, USA; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA. Electronic address: hosein@chemia.ai.

Funding

Unified Computation Tools for Natural Products ResearchR01GM107550 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COTTRELL, GARRISON W, GERWICK, WILLIAM HENRY · 2013 to 2025
$8.2M
The biology of Cryptococcus neoformans melanizationR01AI171093 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Arturo Casadevall, JOSHUA D NOSANCHUK · 2023 to 2026
$3.2M
Collaborative Microbial Metabolite CenterU24DK133658 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PIETER C DORRESTEIN · 2022 to 2026
$2.9M
Discovering novel small molecule antibiotics from complex microbial communities by integrating computational mass spectrometry and metagenome miningDP2GM137413 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI MOHIMANI, HOSEIN · 2019 to 2019
$2.2M
A novel platform for nonribosomal peptide discoveryR44GM159545 · NIGMS · CHEMIA BIOSCIENCES, INC. · PI Bahar Behsaz · 2025 to 2026
$1.5M
Candida auris extracellular vesicles subvert host immune responsesR21AI156104 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI NOSANCHUK, JOSHUA D · 2021 to 2022
$462k
Scalable discovery of saccharide natural products using high-throughput multi-omicsR43TR005259 · NCATS · CHEMIA BIOSCIENCES, INC. · PI BEHSAZ, BAHAR · 2024 to 2024
$317k
Discovering novel natural products from fungal speciesR43GM154504 · NIGMS · CHEMIA BIOSCIENCES, INC. · PI BEHSAZ, BAHAR · 2024 to 2024
$309k
Discovering novel small molecule drugs through tandem mass spectral database searchR43GM150301 · NIGMS · CHEMIA BIOSCIENCES, INC. · PI BEHSAZ, BAHAR · 2023 to 2023
$275k
NCATS NIH HHS R43 TR005259NIAID NIH HHS R01 AI171093NIAID NIH HHS R21 AI156104NIDDK NIH HHS U24 DK133658NIGMS NIH HHS DP2 GM137413NIGMS NIH HHS R01 GM107550NIGMS NIH HHS R43 GM150301NIGMS NIH HHS R43 GM154504NIGMS NIH HHS R44 GM159545
6 · The paper itself

Abstract

Natural products have an unparalleled track record as sources of clinical drugs. Among them, nonribosomal peptides (NRPs) stand as one of the most therapeutically significant classes, encompassing numerous approved anti-infective and anticancer agents. Yet, discovering bioactive NRPs remains profoundly challenging due to their complex biosynthesis and chemical architecture. Here, we present NPDiscover, a pathogen-oriented, scalable bioinformatics platform that integrates genome mining, metabolomics, and machine learning to identify NRPs active against drug-resistant pathogens. Applying NPDiscover to Actinobacteria datasets, we discovered edaphochelin A, a previously unreported NRP that kills multi-drug-resistant Candida auris and Candida glabrata by disrupting respiratory chain proteins. Structural elucidation via nuclear magnetic resonance and mass spectrometry, alongside in vitro and in vivo validation, confirmed its efficacy, safety, and a mode of action distinct from existing antifungals-establishing edaphochelin A as a compelling drug candidate and NPDiscover as a powerful engine for scalable natural product discovery.

Indexed as

Antifungal AgentsCandidiasisDrug DiscoveryDrug Resistance, FungalPeptidesAnimalsBiological ProductsCandida aurisCandida glabrataComputational BiologyHumansAntifungal AgentsBiological ProductsPeptidesanti-fungalanti-infectiveCP: biotechnologyCP: computational biologydrug discoveryinfectious diseasenatural productssmall molecule discovery

Identifiers

PMID42385700
PMCPMC13615493

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.