Evidence map›Paper›PMID 42384677›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

A systems-level atlas of carbon-response transcriptional states in

Jongoh Shin, Arjun Patel, Xuwen A Lou, Edward Alexander Catoiu, Jayanth Krishnan, Ying Hefner, Richard Szubin, Jaemin Sung, Hyeoncheol Francis Son, Daniel C Zielinski and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jongoh ShinDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0002-5094-1912
Arjun PatelDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
Xuwen A LouDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
Edward Alexander CatoiuDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0001-8680-7291
Jayanth KrishnanDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
Ying HefnerDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
Richard SzubinDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
Jaemin SungDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
Hyeoncheol Francis SonSchool of Biological Sciences and Technology, College of Natural Sciences, Chonnam National University, Gwangju 61186, Republic of Korea.ORCID 0000-0002-8096-8163
Daniel C ZielinskiDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0001-6452-483X
Bernhard Ørn PalssonDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0003-2357-6785

Funding

InnoCORE program of the Ministry of Science and ICT N10260100KAIST Strategic Research Program N10260074Korea Ministry of Climate, Energy and Environment RS-2026-25505528Ministry of Health and Welfare (MOHW) RS-2025-25459531National Research Foundation of Korea (NRF) RS-2024-00442775Novo Nordisk Foundation Center for Biosustainability NNF20CC0035580
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

CarbonEscherichia coliTranscription, GeneticCyclic AMP Receptor ProteinEscherichia coli ProteinsGene Expression Regulation, BacterialGene Regulatory NetworksTranscriptomeCarbonCyclic AMP Receptor ProteinEscherichia coli Proteinscarbon catabolite repressioniModulonnutrient responsesystems biologytranscriptional regulatory networks

Identifiers

PMID42384677
PMCPMC13343008

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.