ArticlePlant phenomics (Washington, D.C.)2026
Atlas-based spatiotemporal MRI phenotyping of 3D fungal spread in grapevine wood.
Article in Plant phenomics (Washington, D.C.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
In perennial crops, inner wood degradation by pathogens often escapes detection until irreversible damage has occurred. Grapevine trunk diseases (GTDs) are a well-known example in viticulture that alter plants from within, years before foliar symptoms arise, making early assessment difficult. To overcome this limitation, we present a novel non-destructive 3D + t pipeline for high-resolution Magnetic Resonance Imaging (MRI) spatial quantification and monitoring of early internal host tissue degradation resulting from fungal pathogen colonization. The pipeline integrates spatiotemporal anatomical alignment and rigid registration; a generalized cylindrical-coordinate transformation; supervised segmentation of water-depleted regions; and population-level statistical analyses, including population mean images, probabilistic atlases, and 3D lesion descriptors. Applied to multiple
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