Evidence map›Paper›PMID 42379567›Full record

ReviewGenome biology and evolution2026

Toward a Functional Genetics of Adaptation: Insights From Microbial Experimental Evolution.

Rees Kassen

Abstract readReview
In one paragraph

Review in Genome biology and evolution, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Rees KassenDepartment of Biology, McGill University, Montreal, Canada.ORCID 0000-0002-5617-4259

Funding

Natural Sciences and Engineering Research Council of Canada 2025ZD0122605
6 · The paper itself

Abstract

A general theory of adaptation is one that accounts for both the quantitative and functional properties of adaptive evolution. To date, the field has focused more on the former and less on the latter. Here, I build on the results of adaptive laboratory evolution experiments in microbes to present a sketch for a functional theory of adaptation built around the idea that the primary source of selection in the initial stages of adaptation involves rapid re-growth in the presence of stress. Consequently, the genes targeted during adaptation are often those involved in the regulation of gene expression, including global regulators associated with managing the stress response. These mutations, especially those involving high level gene regulation, are often highly pleiotropic, in contrast to the expectation derived from the quantitative theory of adaptation. Whether this theory can be used to make sense of adaptation more generally beyond microbial evolution experiments remains an open issue.

Indexed as

Adaptation, BiologicalAdaptation, PhysiologicalBiological EvolutionDirected Molecular EvolutionEvolution, MolecularBacteriaMutationSelection, GeneticStress, Physiologicaladaptationadaptive laboratory evolutiongene regulationgeneticsmicrobial evolutionstress

Identifiers

PMID42379567
PMCPMC13335803

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.