Evidence map›Paper›PMID 42373778›Full record

ArticleNucleic acids research2026

Epigenetic landscape of synthetic human centromere core regions: CENP-A assembly and euchromatic modifications interdependently antagonize heterochromatin accumulation.

Junichiro Ohzeki, Akiko Watanabe, Jia Xian Lee, Chiharu Minami, Kazuto Kugou, Kyotaro Yamazaki, Kenta Shirasawa, Sachiko Isobe, Yusuke Endo, Yasuhiro Kazuki

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Junichiro OhzekiChromosome Engineering Research Center, Tottori University, 86 Nishi-cho, Yonago, Tottori 683-8503, Japan.ORCID 0009-0002-3831-4489
Akiko WatanabeKazusa DNA Research Institute (KDRI), 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan.
Jia Xian LeeDivision of Chromosome Biomedical Engineering, Graduate School of Medical Science, Tottori University, 86 Nishi-cho, Yonago, Tottori 683-8503, Japan.
Chiharu MinamiKazusa DNA Research Institute (KDRI), 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan.
Kazuto KugouKazusa DNA Research Institute (KDRI), 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan.
Kyotaro YamazakiChromosome Engineering Research Group, The Exploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji, Okazaki, Aichi 444-8787, Japan.
Kenta ShirasawaKazusa DNA Research Institute (KDRI), 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan.ORCID 0000-0001-7880-6221
Sachiko IsobeKazusa DNA Research Institute (KDRI), 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan.
Yusuke EndoKazusa DNA Research Institute (KDRI), 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan.ORCID 0000-0002-7223-1938
Yasuhiro KazukiChromosome Engineering Research Center, Tottori University, 86 Nishi-cho, Yonago, Tottori 683-8503, Japan.ORCID 0000-0003-4818-4710

Funding

CREST program JPMJCR18S4ExCELLS 21-101Japan Agency for Medical Research and Development JP26ama121046Japan Science and Technology Agency JPMJPR18K3Japan Society for Promotion of Science 23K05611Kazusa DNA research Institute Foundation
6 · The paper itself

Abstract

Centromeres are specialized chromatin structures essential for equal chromosome segregation. The human centromeres are organized on a portion of homogeneously repeated DNA sequence and contains nucleosomes including centromere specific histone H3 variant CENP-A. Histone modifications around the CENP-A dense region are also thought to have important roles in centromere function. Here, we used human artificial chromosome (HAC) system based on synthetic centromeric repeat DNA to enable structural and chromatin analysis at ∼2-kb resolution within defined centromere core domains. Analysis using this HAC centromere showed that the CENP-A dense regions span approximately 18-50 kb in size and coexisted with euchromatic histone modifications in an interdependent manner. We further found that when DNA replication reduced CENP-A density, a heterochromatin modification H3K9me3 transiently accumulated in the CENP-A-dense regions. This accumulation was suppressed by the CENP-A deposition factor HJURP and the histone acetyltransferase KAT7, suggesting that CENP-A assembly and euchromatic modifications interdependently antagonize heterochromatin accumulation. The synthetic centromere DNA generated in this study elucidates the epigenetic landscape within the centromere core regions and provides a more precise framework for understanding the dynamic balance between CENP-A assembly and histone modifications.

Indexed as

CentromereCentromere Protein AChromosomal Proteins, Non-HistoneEpigenesis, GeneticEuchromatinHeterochromatinChromosomes, Artificial, HumanDNA-Binding ProteinsDNA ReplicationHistone AcetyltransferasesHistonesHumansCENPA protein, humanCentromere Protein AChromosomal Proteins, Non-HistoneDNA-Binding ProteinsEuchromatinHeterochromatinHistone AcetyltransferasesHistonesHJURP protein, human

Identifiers

PMID42373778
PMCPMC13314379

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.