Evidence map›Paper›PMID 42373674›Full record

ArticleScientific data2026

De novo transcriptome assembly of a pigmentation-variable population of cave snail Physella sp.

Magdalena Grgić, Robert G Weck, Gaj Keresteš, Lara Kalogjera, Helena Bilandžija

Abstract readDataset
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Magdalena GrgićRuđer Bošković Institute, Bijenička cesta 54, Zagreb, 10000, Croatia.
Robert G WeckSouthwestern Illinois College, Belleville, Illinois, 62221, USA.
Gaj KerestešRuđer Bošković Institute, Bijenička cesta 54, Zagreb, 10000, Croatia.
Lara KalogjeraRuđer Bošković Institute, Bijenička cesta 54, Zagreb, 10000, Croatia.
Helena BilandžijaRuđer Bošković Institute, Bijenička cesta 54, Zagreb, 10000, Croatia. hbilandz@irb.hr.ORCID http://orcid.org/0000-0002-4922-0149

Funding

Hrvatska Zaklada za Znanost (Croatian Science Foundation) DOK-2020-01Hrvatska Zaklada za Znanost (Croatian Science Foundation) TTP-2018-07-9675
6 · The paper itself

Abstract

Subterranean ecosystems are among the most widespread yet least explored environments on Earth. Species that are not obligate cave dwellers are especially understudied, due to the predominant research focus on obligate subterranean organisms. Although aquatic snails represent one of the most species-rich groups in groundwater, no genomic resources have been available for these taxa until now. To fill this gap, we generated a reference transcriptome for a cave-dwelling snail of the genus Physella. The Physella population from Fogelpole Cave, IL, USA, exhibits heteromorphic phenotypes, with individuals ranging from fully pigmented to completely lacking pigment. The reference transcriptome generated in this study shows high BUSCO scores, high mapping rates and robust overall quality metrics. These datasets provide a valuable resource for investigating molecular changes associated with the early stages of cave adaptation and the evolution of specialized cave traits, especially the loss of pigmentation.

Indexed as

PigmentationSnailsTranscriptomeAnimalsCaves

Identifiers

PMID42373674
PMCPMC13680462

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.