Evidence map›Paper›PMID 42362560›Full record

ArticleNature communications2026

Spatial transcriptomics identifies immune-stromal niches associated with cancer in adult dermatomyositis.

Ksenia S Anufrieva, Neda Shahriari, Ce Gao, Stephanie Pei Tung Yiu, Shideh Kazerounian, Rochelle L Castillo, Jessica Liu, Sean A Prell, Kartik Bhamidipati, Khashayar Afshari and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors.

Ksenia S Anufrieva *Division of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Neda Shahriari *Department of Dermatology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Ce GaoDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-9804-261X
Stephanie Pei Tung YiuCenter for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-1792-247X
Shideh KazerounianDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Rochelle L CastilloDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Jessica LiuDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0009-0006-6289-5155
Sean A PrellDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Kartik BhamidipatiDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Khashayar AfshariDepartment of Dermatology, UMass Chan Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0001-9099-7948
Lindsay ParmeleeCenter for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Anastasia N KazakovaLopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Medical Biological Agency, Moscow, Russia.
Erin TheisenDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Teresa BowmanDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Avery LaChanceDepartment of Dermatology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
William J CrislerDepartment of Dermatology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1767-9809
Kimberly HashemiDepartment of Dermatology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Ilya KorsunskyBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Sizun JiangCenter for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-6149-3142
Mehdi RashighiDepartment of Dermatology, UMass Chan Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0002-9170-5887
Ruth Ann VleugelsDepartment of Dermatology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Kevin WeiDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. kwei@bwh.harvard.edu.ORCID http://orcid.org/0000-0002-1821-167X

Funding

The Next Generation Immunoanalysis CoreP30AR069625 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI LEDERER, JAMES A. · 2016 to 2025
$8.8M
Predictive drivers of new onset, relapse, and progression of human autoimmunity in skinU01AI176310 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Manuel Garber, John E Harris · 2023 to 2026
$5.3M
Parsing cholesterol metabolite regulation of skin immunocytes in children to identify archetypes of human neonatal immune systemU01AI168640 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Joonsoo Kang, Mehdi Rashighi · 2022 to 2026
$4.1M
Pathogenic fibroblast differentiation in rheumatoid arthritisK08AR077037 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI WEI, KEVIN S · 2020 to 2024
$799k
Burroughs Wellcome Fund (BWF) Career Awards for Medical ScientistsDermatology Foundation (DF) Patient-Directed Investigation GrantDoris Duke Charitable Foundation (DDCF) Clinical Scientist Development AwardNIAID NIH HHS U01 AI168640NIAID NIH HHS U01 AI176310NIAMS NIH HHS K08 AR077037NIAMS NIH HHS P30 AR069625
6 · The paper itself

Abstract

Adult-onset dermatomyositis (DM) is an autoimmune inflammatory myopathy with distinct cutaneous manifestations and a strong association with malignancy. Through comparative analysis with cutaneous lupus erythematosus (CLE), our integrated spatial and single-cell transcriptomics analysis reveals unique immune and stromal niches associated with DM subtypes. We find that cancer-associated DM skin lesions are distinguished by the presence of dispersed immune infiltrates enriched with macrophages or organized lymphoid aggregates with dense B cell cores surrounded by CD4 + /CD8 + T cells, accompanied by preserved vascular architecture. In contrast, non-cancer-associated DM skin is characterized by dense myeloid cell infiltrates, harbouring elevated expression of IL1B and CXCL10 localizing near injured vascular endothelia. Cytokines produced by these myeloid infiltrates, together with local tissue hypoxia, trigger dramatic stromal remodelling, leading to loss of vascular-associated fibroblasts. In addition to the CXCL10+ myeloid signature, non-cancer-associated DM skin is characterized by specific cellular pairs: PD-L1-expressing mature dendritic cells enriched in immunoregulatory molecules (mregDC) and activated regulatory T cells (Treg) expressing NFKB2 and TNF receptors. While both DM and CLE show strong interferon signatures, DM uniquely displays IFNβ expression. Together, our study provides a comprehensive spatial mapping of immune and stromal cells in adult-onset DM.

Indexed as

DermatomyositisNeoplasmsChemokine CXCL10Dendritic CellsFemaleHumansInterleukin-1betaMacrophagesSkinSpatial TranscriptomicsStromal CellsT-Lymphocytes, RegulatoryTranscriptomeTumor MicroenvironmentChemokine CXCL10Interleukin-1beta

Identifiers

PMID42362560
PMCPMC13448213

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.