Evidence map›Paper›PMID 42360536›Full record

ArticleJournal of medical systems2026

Calibration of Self-Reported Confidence and Accuracy of Large Language Models in Medical Question Answering.

Sebastian Daniel Boie, Florian Reis, Nicolas Frey, Elias Grünewald, Felix Balzer

Abstract read
In one paragraph

Article in Journal of medical systems, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sebastian Daniel Boie *Institute of Medical Informatics, Charité - University Medical Center Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany. sebastian-daniel.boie@charite.de.ORCID https://orcid.org/0000-0001-7993-7901
Florian Reis *Institute of Medical Informatics, Charité - University Medical Center Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Nicolas FreyInstitute of Medical Informatics, Charité - University Medical Center Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Elias GrünewaldInstitute of Medical Informatics, Charité - University Medical Center Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Felix BalzerInstitute of Medical Informatics, Charité - University Medical Center Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo evaluate the alignment between self-reported confidence of large language models (LLM) and their accuracy in answering medical multiple-choice questions. MATERIALS AND

methodsWe prompted six LLMs (GPT-5, GPT-5-mini, GPT-5-nano, GPT-4o, Claude Sonnet 4.5, and Gemini 2.5) to answer MedMCQA items and report confidence scores. Based on 12,000 LLM responses, we calculated Expected Calibration Errors (ECE) by averaging absolute differences between observed accuracy and predicted confidence.

resultsMean ECE differed by model (Claude Sonnet 4.5 best: 0.06; Gpt-4o worst: 0.127) and varied across specialties ("Skin" best: 0.041; "Social & Preventive Medicine" worst: 0.141). Accuracy of examined LLMs showed analogous variation between specialties. DISCUSSION: Our results demonstrate that high accuracy does not guarantee reliable uncertainty estimation. We identified substantial heterogeneity across medical specialties, where pooled metrics masked a threefold ECE increase between best- and worst-performing domains.

conclusionWe recommend incorporating calibration reporting into LLM evaluations, as larger models exhibit improved "self-knowledge", but uneven overconfidence persists.

Indexed as

Large Language ModelsSelf ReportCalibrationHumansAccuracyCalibrationConfidenceLarge language model

Identifiers

PMID42360536
PMCPMC13309378

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.