ArticleBioinformatics advances2026
pygenoscape: a Python package for spatial interpolation and visualization of genetic distance landscapes.
Article in Bioinformatics advances, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Motivation: Spatial genetic structure is central to population genetics and phylogeography, but many approaches rely on discrete population models or summary statistics that can obscure continuous geographic patterns. Results: We developed pygenoscape, an open-source Python package for transforming pairwise genetic distance data into continuous spatial representations of genetic turnover. The package accepts precomputed genetic distance matrices or aligned nucleotide sequence data and combine distance embedding, geographic projection, spatial interpolation, and interactive visualization in a reproducible command-line workflow. We demonstrate its utility using genome-wide data from the invasive bumblebee Availability and implementation: pygenoscape is freely available at https://github.com/parasiteguy/pygenoscape under the MIT License and can be installed from PyPI using pip install pygenoscape.
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