Evidence map›Paper›PMID 42357687›Full record

ArticleViruses2026

Genomic Surveillance of Endemic Human Coronaviruses in Côte d'Ivoire Using Targeted Hybrid-Capture Sequencing.

Ange-Michèle M'bra, Syndou Meite, Herve A Kadjo, Luc Venance Kouakou, Yakoura Ouattara, Mouhamed Kane, Helene A Kouassi, Ndeye Awa Ndiaye, Olivia Cariolh Koumba-Koumba, Alida Mouliom and 5 more

Abstract read
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In one paragraph

Article in Viruses, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Ange-Michèle M'braDepartment of Epidemic Viruses, Pasteur Institute of Côte d'Ivoire, Abidjan 01 BP 490, Côte d'Ivoire.
Syndou MeiteMolecular Biology Platform, Pasteur Institute of Côte d'Ivoire, Abidjan 01 BP 490, Côte d'Ivoire.
Herve A KadjoDepartment of Epidemic Viruses, Pasteur Institute of Côte d'Ivoire, Abidjan 01 BP 490, Côte d'Ivoire.
Luc Venance KouakouDepartment of Biochemistry and Genetics, Peleforo Gon Coulibaly University, Korhogo BP 1328, Côte d'Ivoire.
Yakoura OuattaraDepartment of Epidemic Viruses, Pasteur Institute of Côte d'Ivoire, Abidjan 01 BP 490, Côte d'Ivoire.ORCID 0000-0001-9354-8689
Mouhamed KaneVirology Department, Institut Pasteur de Dakar, 36 Avenue Pasteur, Dakar BP 220, Senegal.
Helene A KouassiDepartment of Epidemic Viruses, Pasteur Institute of Côte d'Ivoire, Abidjan 01 BP 490, Côte d'Ivoire.
Ndeye Awa NdiayeVirology Department, Institut Pasteur de Dakar, 36 Avenue Pasteur, Dakar BP 220, Senegal.
Olivia Cariolh Koumba-KoumbaDepartment of Epidemic Viruses, Pasteur Institute of Côte d'Ivoire, Abidjan 01 BP 490, Côte d'Ivoire.
Alida MouliomDepartment of Epidemic Viruses, Pasteur Institute of Côte d'Ivoire, Abidjan 01 BP 490, Côte d'Ivoire.
Safiétou SankheVirology Department, Institut Pasteur de Dakar, 36 Avenue Pasteur, Dakar BP 220, Senegal.ORCID 0000-0001-8559-2161
David Coulibaly NgoloMolecular Biology Platform, Pasteur Institute of Côte d'Ivoire, Abidjan 01 BP 490, Côte d'Ivoire.ORCID 0000-0001-9405-0954
Ndongo DiaVirology Department, Institut Pasteur de Dakar, 36 Avenue Pasteur, Dakar BP 220, Senegal.
Edgard AdjogouaDepartment of Epidemic Viruses, Pasteur Institute of Côte d'Ivoire, Abidjan 01 BP 490, Côte d'Ivoire.
Moussa Moise DiagneVirology Department, Institut Pasteur de Dakar, 36 Avenue Pasteur, Dakar BP 220, Senegal.ORCID 0000-0001-5461-5623

Funding

Gates Foundation INV-018278Gates Foundation INV-018978Gates Foundation INV-036379Gates Foundation INV-036413
6 · The paper itself

Abstract

Endemic human coronaviruses (HCoVs) are important contributors to respiratory infections, yet genomic data from sub-Saharan Africa remain limited. We analyzed 13,530 nasopharyngeal samples collected through the national influenza sentinel surveillance network in Côte d'Ivoire between 2022 and 2024 to characterize the circulation and genomic diversity of endemic HCoVs. A subset of 52 RT-qPCR-positive samples with Ct values ≤ 28 was selected for targeted hybrid-capture sequencing using the Twist Bioscience Respiratory Virus Research Panel. Genome recovery metrics were available for 28 samples, including HCoV-NL63 (

Indexed as

CoronavirusCoronavirus InfectionsGenome, ViralCote d'IvoireEndemic DiseasesGenetic VariationGenomicsHumansNasopharynxPhylogenyRespiratory Tract InfectionsCôte d’Ivoireendemic human coronavirusesgenomic surveillancehybrid-capture sequencingphylogenetic analysisrespiratory viruses

Identifiers

PMID42357687
PMCPMC13307596

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.